Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 AC009237.3-201ENST00000393279 1427 ntBASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 AGPS-202ENST00000409888 815 ntTSL 4 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 TK2-202ENST00000417693 1046 ntTSL 2 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 SPCS2P3-201ENST00000500401 656 ntBASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC01558Q9Y6Z2 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 ADM-208ENST00000534464 1640 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 AC139749.1-202ENST00000617529 3139 ntBASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 HLA-G-203ENST00000376818 1127 ntBASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 AC019171.1-201ENST00000601251 1056 ntBASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 PXK-203ENST00000383715 1756 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
LINC01558Q9Y6Z2 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC9.15□□□□□ -0.94
LINC01558Q9Y6Z2 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms