Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX2IPQ9Y2D8 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX2IPQ9Y2D8 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
SSX2IPQ9Y2D8 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX2IPQ9Y2D8 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.1■□□□□ 0.65
SSX2IPQ9Y2D8 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.1■□□□□ 0.65
SSX2IPQ9Y2D8 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SSX2IPQ9Y2D8 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.1■□□□□ 0.65
SSX2IPQ9Y2D8 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.1■□□□□ 0.65
SSX2IPQ9Y2D8 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX2IPQ9Y2D8 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 AC097374.2-201ENST00000618617 1306 ntBASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX2IPQ9Y2D8 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SSX2IPQ9Y2D8 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SSX2IPQ9Y2D8 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SSX2IPQ9Y2D8 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SSX2IPQ9Y2D8 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
SSX2IPQ9Y2D8 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SSX2IPQ9Y2D8 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SSX2IPQ9Y2D8 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.08■□□□□ 0.65
SSX2IPQ9Y2D8 PMS2P7-201ENST00000506558 1336 ntBASIC19.08■□□□□ 0.65
SSX2IPQ9Y2D8 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.65
SSX2IPQ9Y2D8 GMCL1P1-201ENST00000463439 1581 ntBASIC19.08■□□□□ 0.65
SSX2IPQ9Y2D8 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 FAM220CP-201ENST00000395253 831 ntBASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 HNRNPDP1-201ENST00000439535 754 ntBASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 AC021087.4-201ENST00000563761 564 ntBASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 TERC-201ENST00000602385 541 ntBASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 AC116407.3-201ENST00000623905 1129 ntBASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
SSX2IPQ9Y2D8 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 AC099343.3-201ENST00000605834 2503 ntBASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX2IPQ9Y2D8 HLA-J-201ENST00000462773 1622 ntBASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms