Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 AC133963.1-201ENST00000504166 1679 ntBASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 KRT18P1-202ENST00000452408 1331 ntBASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 AC005336.2-201ENST00000593183 939 ntBASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 AC091076.1-201ENST00000610741 619 ntBASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
AP4E1Q9UPM8 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 AC246785.2-201ENST00000432512 513 ntBASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 AP002383.4-201ENST00000442518 975 ntBASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 AC069148.1-201ENST00000608741 768 ntBASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 AC010460.3-201ENST00000511359 1579 ntBASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 AC097374.2-201ENST00000618617 1306 ntBASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
AP4E1Q9UPM8 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 AC125634.1-201ENST00000438758 1403 ntBASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
AP4E1Q9UPM8 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms