Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 SLC25A6P4-201ENST00000586535 553 ntBASIC18.74■□□□□ 0.59
CDH9Q9ULB4 AC019129.2-201ENST00000609837 1235 ntBASIC18.74■□□□□ 0.59
CDH9Q9ULB4 AL139288.1-201ENST00000623748 933 ntBASIC18.74■□□□□ 0.59
CDH9Q9ULB4 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 BCL2-203ENST00000589955 5011 ntBASIC18.74■□□□□ 0.59
CDH9Q9ULB4 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 MRPL3P1-201ENST00000400109 1033 ntBASIC18.73■□□□□ 0.59
CDH9Q9ULB4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 AC073592.5-201ENST00000624854 528 ntBASIC18.73■□□□□ 0.59
CDH9Q9ULB4 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 AL390961.4-201ENST00000623958 2535 ntBASIC18.73■□□□□ 0.59
CDH9Q9ULB4 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.73■□□□□ 0.59
CDH9Q9ULB4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 AC079776.2-201ENST00000641154 1609 ntBASIC18.72■□□□□ 0.59
CDH9Q9ULB4 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 KRT18P67-201ENST00000432816 1264 ntBASIC18.72■□□□□ 0.59
CDH9Q9ULB4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 AF186996.4-201ENST00000467186 377 ntBASIC18.72■□□□□ 0.59
CDH9Q9ULB4 AC073648.2-201ENST00000510116 352 ntBASIC18.72■□□□□ 0.59
CDH9Q9ULB4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 SART3-203ENST00000546611 1184 ntBASIC18.72■□□□□ 0.59
CDH9Q9ULB4 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 AC109462.3-201ENST00000573934 613 ntBASIC18.72■□□□□ 0.59
CDH9Q9ULB4 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CDH9Q9ULB4 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.71■□□□□ 0.59
CDH9Q9ULB4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms