Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 AL158047.1-201ENST00000445918 881 ntBASIC17.52■□□□□ 0.4
MKS1Q9NXB0 AC128688.1-201ENST00000487626 519 ntBASIC17.52■□□□□ 0.4
MKS1Q9NXB0 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 AC024563.2-201ENST00000603282 481 ntBASIC17.52■□□□□ 0.4
MKS1Q9NXB0 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.52■□□□□ 0.4
MKS1Q9NXB0 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.52■□□□□ 0.4
MKS1Q9NXB0 LINC02012-201ENST00000608206 1725 ntBASIC17.52■□□□□ 0.39
MKS1Q9NXB0 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
MKS1Q9NXB0 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
MKS1Q9NXB0 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.52■□□□□ 0.39
MKS1Q9NXB0 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
MKS1Q9NXB0 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 AP000523.1-201ENST00000398242 1049 ntBASIC17.51■□□□□ 0.39
MKS1Q9NXB0 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 AC046185.3-201ENST00000623228 1824 ntBASIC17.51■□□□□ 0.39
MKS1Q9NXB0 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 PCDHB19P-201ENST00000570871 2371 ntBASIC17.51■□□□□ 0.39
MKS1Q9NXB0 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MKS1Q9NXB0 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 AL139384.1-201ENST00000612143 3047 ntBASIC17.5■□□□□ 0.39
MKS1Q9NXB0 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 AC138932.1-201ENST00000534164 6830 ntBASIC17.5■□□□□ 0.39
MKS1Q9NXB0 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MKS1Q9NXB0 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms