Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 HLA-J-201ENST00000462773 1622 ntBASIC18.28■□□□□ 0.52
USP29Q9HBJ7 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 TSPY12P-201ENST00000421279 868 ntBASIC18.28■□□□□ 0.52
USP29Q9HBJ7 BX276092.5-203ENST00000456199 560 ntBASIC18.28■□□□□ 0.52
USP29Q9HBJ7 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 AP003733.1-201ENST00000491725 852 ntBASIC18.28■□□□□ 0.52
USP29Q9HBJ7 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 AC112698.1-201ENST00000510299 916 ntBASIC18.28■□□□□ 0.52
USP29Q9HBJ7 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 MIR3652-201ENST00000579335 131 ntBASIC18.28■□□□□ 0.52
USP29Q9HBJ7 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 AC011498.5-201ENST00000592027 486 ntBASIC18.28■□□□□ 0.52
USP29Q9HBJ7 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 AL353692.3-201ENST00000407031 1396 ntBASIC18.28■□□□□ 0.52
USP29Q9HBJ7 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.28■□□□□ 0.52
USP29Q9HBJ7 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 AC068472.1-201ENST00000474589 881 ntBASIC18.27■□□□□ 0.52
USP29Q9HBJ7 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 AC092329.2-201ENST00000598402 547 ntBASIC18.27■□□□□ 0.52
USP29Q9HBJ7 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 LINC01451-201ENST00000623792 534 ntBASIC18.27■□□□□ 0.52
USP29Q9HBJ7 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
USP29Q9HBJ7 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 TSSC2-201ENST00000450217 709 ntBASIC18.26■□□□□ 0.51
USP29Q9HBJ7 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP29Q9HBJ7 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.25■□□□□ 0.51
USP29Q9HBJ7 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms