Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 PHGDH-209ENST00000641074 1780 ntBASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 AC112191.1-201ENST00000523689 701 ntBASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 ACTL9-202ENST00000612068 1252 ntBASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF541Q9H0D2 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 AL355306.1-201ENST00000415580 579 ntBASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 DDX43P3-201ENST00000441064 443 ntBASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 TSPY16P-201ENST00000449843 468 ntBASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 DUTP2-201ENST00000519164 463 ntBASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 AC099522.2-201ENST00000607001 744 ntBASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 AC009336.1-201ENST00000608941 1553 ntBASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.09■□□□□ 0.97
ZNF541Q9H0D2 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 NABP1-203ENST00000409510 843 ntTSL 5 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 CNN2P2-201ENST00000443536 909 ntBASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 FAM185BP-201ENST00000443595 716 ntBASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 CNN2P3-201ENST00000450201 906 ntBASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 GAPDHP21-201ENST00000450301 1010 ntBASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 GATB-205ENST00000508611 605 ntTSL 2 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 AL136317.3-201ENST00000618497 906 ntBASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 PC-208ENST00000529047 1607 ntTSL 3 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.08■□□□□ 0.97
ZNF541Q9H0D2 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
ZNF541Q9H0D2 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
ZNF541Q9H0D2 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
ZNF541Q9H0D2 AC100803.2-201ENST00000562459 1963 ntBASIC21.08■□□□□ 0.96
ZNF541Q9H0D2 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
ZNF541Q9H0D2 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
ZNF541Q9H0D2 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms