Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
VRK1Q99986 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC15.72■□□□□ 0.11
VRK1Q99986 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.72■□□□□ 0.11
VRK1Q99986 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.72■□□□□ 0.11
VRK1Q99986 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
VRK1Q99986 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 TSSC2-201ENST00000450217 709 ntBASIC15.72■□□□□ 0.11
VRK1Q99986 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.72■□□□□ 0.11
VRK1Q99986 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.72■□□□□ 0.11
VRK1Q99986 AC009065.1-201ENST00000564055 1225 ntBASIC15.72■□□□□ 0.11
VRK1Q99986 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.72■□□□□ 0.11
VRK1Q99986 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
VRK1Q99986 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.72■□□□□ 0.11
VRK1Q99986 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VRK1Q99986 PBK-203ENST00000522944 1499 ntTSL 2 BASIC15.71■□□□□ 0.11
VRK1Q99986 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC15.71■□□□□ 0.11
VRK1Q99986 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.71■□□□□ 0.11
VRK1Q99986 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
VRK1Q99986 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
VRK1Q99986 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
VRK1Q99986 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC15.71■□□□□ 0.11
VRK1Q99986 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.71■□□□□ 0.11
VRK1Q99986 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC15.71■□□□□ 0.11
VRK1Q99986 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.71■□□□□ 0.11
VRK1Q99986 TSPY22P-201ENST00000427496 604 ntBASIC15.71■□□□□ 0.11
VRK1Q99986 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC15.71■□□□□ 0.11
VRK1Q99986 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.71■□□□□ 0.11
VRK1Q99986 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC15.71■□□□□ 0.11
VRK1Q99986 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 AC092329.2-201ENST00000598402 547 ntBASIC15.71■□□□□ 0.11
VRK1Q99986 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.71■□□□□ 0.11
VRK1Q99986 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VRK1Q99986 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.1
VRK1Q99986 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
VRK1Q99986 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VRK1Q99986 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VRK1Q99986 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
VRK1Q99986 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
VRK1Q99986 OR6D1P-203ENST00000641209 4860 ntBASIC15.71■□□□□ 0.1
VRK1Q99986 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
VRK1Q99986 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC15.7■□□□□ 0.1
VRK1Q99986 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
VRK1Q99986 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.7■□□□□ 0.1
VRK1Q99986 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
VRK1Q99986 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.7■□□□□ 0.1
VRK1Q99986 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC15.7■□□□□ 0.1
VRK1Q99986 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
VRK1Q99986 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
VRK1Q99986 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.7■□□□□ 0.1
VRK1Q99986 ATP5G2P1-201ENST00000433580 426 ntBASIC15.7■□□□□ 0.1
VRK1Q99986 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC15.7■□□□□ 0.1
VRK1Q99986 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC15.7■□□□□ 0.1
VRK1Q99986 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.7■□□□□ 0.1
VRK1Q99986 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.7■□□□□ 0.1
VRK1Q99986 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC15.7■□□□□ 0.1
VRK1Q99986 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VRK1Q99986 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15.7■□□□□ 0.1
VRK1Q99986 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VRK1Q99986 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VRK1Q99986 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms