Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA3Q99758 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA3Q99758 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC23.4■■□□□ 1.34
ABCA3Q99758 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA3Q99758 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC23.4■■□□□ 1.34
ABCA3Q99758 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA3Q99758 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA3Q99758 CD81-202ENST00000381036 880 ntTSL 3 BASIC23.4■■□□□ 1.34
ABCA3Q99758 NABP1-203ENST00000409510 843 ntTSL 5 BASIC23.4■■□□□ 1.34
ABCA3Q99758 TREML5P-201ENST00000421694 576 ntBASIC23.4■■□□□ 1.34
ABCA3Q99758 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
ABCA3Q99758 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA3Q99758 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA3Q99758 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA3Q99758 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
ABCA3Q99758 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC23.4■■□□□ 1.34
ABCA3Q99758 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA3Q99758 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA3Q99758 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA3Q99758 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA3Q99758 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC23.4■■□□□ 1.34
ABCA3Q99758 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC23.4■■□□□ 1.34
ABCA3Q99758 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
ABCA3Q99758 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
ABCA3Q99758 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
ABCA3Q99758 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC23.39■■□□□ 1.34
ABCA3Q99758 AC055876.3-201ENST00000431496 288 ntBASIC23.39■■□□□ 1.34
ABCA3Q99758 TSPY16P-201ENST00000449843 468 ntBASIC23.39■■□□□ 1.34
ABCA3Q99758 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC23.39■■□□□ 1.34
ABCA3Q99758 BAD-207ENST00000544785 525 ntTSL 3 BASIC23.39■■□□□ 1.34
ABCA3Q99758 TSFM-210ENST00000550559 897 ntTSL 5 BASIC23.39■■□□□ 1.34
ABCA3Q99758 DUX4L17-201ENST00000557360 1267 ntBASIC23.39■■□□□ 1.34
ABCA3Q99758 AC140878.1-201ENST00000565277 250 ntBASIC23.39■■□□□ 1.34
ABCA3Q99758 INO80E-210ENST00000567705 880 ntTSL 3 BASIC23.39■■□□□ 1.34
ABCA3Q99758 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC23.39■■□□□ 1.34
ABCA3Q99758 CECR7-204ENST00000609932 568 ntTSL 2 BASIC23.39■■□□□ 1.34
ABCA3Q99758 AC138649.4-201ENST00000612222 287 ntBASIC23.39■■□□□ 1.34
ABCA3Q99758 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC23.39■■□□□ 1.34
ABCA3Q99758 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC23.39■■□□□ 1.34
ABCA3Q99758 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
ABCA3Q99758 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC23.39■■□□□ 1.34
ABCA3Q99758 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.34
ABCA3Q99758 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
ABCA3Q99758 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
ABCA3Q99758 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC23.39■■□□□ 1.34
ABCA3Q99758 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
ABCA3Q99758 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.33
ABCA3Q99758 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
ABCA3Q99758 VMA21-202ENST00000370361 693 ntTSL 5 BASIC23.39■■□□□ 1.33
ABCA3Q99758 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC23.39■■□□□ 1.33
ABCA3Q99758 SPDYE14P-201ENST00000442619 822 ntBASIC23.39■■□□□ 1.33
ABCA3Q99758 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC23.39■■□□□ 1.33
ABCA3Q99758 AC002558.1-201ENST00000488906 803 ntBASIC23.39■■□□□ 1.33
ABCA3Q99758 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC23.39■■□□□ 1.33
ABCA3Q99758 AC079140.1-201ENST00000508039 487 ntBASIC23.39■■□□□ 1.33
ABCA3Q99758 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC23.39■■□□□ 1.33
ABCA3Q99758 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC23.39■■□□□ 1.33
ABCA3Q99758 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC23.38■■□□□ 1.33
ABCA3Q99758 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC23.38■■□□□ 1.33
ABCA3Q99758 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC23.38■■□□□ 1.33
ABCA3Q99758 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
ABCA3Q99758 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
ABCA3Q99758 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
ABCA3Q99758 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC23.38■■□□□ 1.33
ABCA3Q99758 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC23.38■■□□□ 1.33
ABCA3Q99758 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC23.38■■□□□ 1.33
ABCA3Q99758 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
ABCA3Q99758 AC107890.1-201ENST00000422478 521 ntBASIC23.38■■□□□ 1.33
ABCA3Q99758 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC23.38■■□□□ 1.33
ABCA3Q99758 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
ABCA3Q99758 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC23.38■■□□□ 1.33
ABCA3Q99758 SLC25A39P2-201ENST00000537614 270 ntBASIC23.38■■□□□ 1.33
ABCA3Q99758 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC23.38■■□□□ 1.33
ABCA3Q99758 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC23.38■■□□□ 1.33
ABCA3Q99758 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
ABCA3Q99758 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
ABCA3Q99758 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC23.38■■□□□ 1.33
ABCA3Q99758 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
ABCA3Q99758 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
ABCA3Q99758 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC23.38■■□□□ 1.33
ABCA3Q99758 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
ABCA3Q99758 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.37■■□□□ 1.33
ABCA3Q99758 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
ABCA3Q99758 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
ABCA3Q99758 TFAMP1-201ENST00000412727 736 ntBASIC23.37■■□□□ 1.33
ABCA3Q99758 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC23.37■■□□□ 1.33
ABCA3Q99758 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
ABCA3Q99758 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC23.37■■□□□ 1.33
ABCA3Q99758 OARD1-208ENST00000469104 704 ntTSL 2 BASIC23.37■■□□□ 1.33
ABCA3Q99758 NAA50-208ENST00000497255 789 ntTSL 5 BASIC23.37■■□□□ 1.33
ABCA3Q99758 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC23.37■■□□□ 1.33
ABCA3Q99758 RNA5SP421-201ENST00000516864 134 ntBASIC23.37■■□□□ 1.33
ABCA3Q99758 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC23.37■■□□□ 1.33
ABCA3Q99758 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC23.37■■□□□ 1.33
ABCA3Q99758 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
ABCA3Q99758 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
ABCA3Q99758 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
ABCA3Q99758 HARS-203ENST00000431330 1774 ntTSL 2 BASIC23.37■■□□□ 1.33
ABCA3Q99758 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC23.37■■□□□ 1.33
ABCA3Q99758 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms