Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS13AQ96RL7 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
VPS13AQ96RL7 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 IGHV3-72-202ENST00000621503 303 ntBASIC17.4■□□□□ 0.38
VPS13AQ96RL7 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 GPS2P2-201ENST00000430745 888 ntBASIC17.4■□□□□ 0.38
VPS13AQ96RL7 MIR6805-201ENST00000615055 62 ntBASIC17.4■□□□□ 0.38
VPS13AQ96RL7 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.4■□□□□ 0.38
VPS13AQ96RL7 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 AC069335.1-201ENST00000489972 472 ntBASIC17.4■□□□□ 0.38
VPS13AQ96RL7 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
VPS13AQ96RL7 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
VPS13AQ96RL7 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
VPS13AQ96RL7 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS13AQ96RL7 CU639417.3-201ENST00000624240 1404 ntBASIC17.39■□□□□ 0.38
VPS13AQ96RL7 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.39■□□□□ 0.38
VPS13AQ96RL7 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 AC079776.1-201ENST00000401540 1152 ntBASIC17.39■□□□□ 0.37
VPS13AQ96RL7 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 KRT8P48-201ENST00000515599 1220 ntBASIC17.39■□□□□ 0.37
VPS13AQ96RL7 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms