Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RTF1Q92541 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
RTF1Q92541 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC23.13■■□□□ 1.29
RTF1Q92541 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RTF1Q92541 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
RTF1Q92541 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC23.13■■□□□ 1.29
RTF1Q92541 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RTF1Q92541 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
RTF1Q92541 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RTF1Q92541 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RTF1Q92541 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC23.12■■□□□ 1.29
RTF1Q92541 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RTF1Q92541 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RTF1Q92541 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC23.12■■□□□ 1.29
RTF1Q92541 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC23.12■■□□□ 1.29
RTF1Q92541 MSRA-206ENST00000521209 814 ntTSL 3 BASIC23.12■■□□□ 1.29
RTF1Q92541 OR7E14P-202ENST00000530490 1290 ntBASIC23.12■■□□□ 1.29
RTF1Q92541 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC23.12■■□□□ 1.29
RTF1Q92541 AC139887.3-201ENST00000568585 713 ntBASIC23.12■■□□□ 1.29
RTF1Q92541 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC23.12■■□□□ 1.29
RTF1Q92541 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC23.12■■□□□ 1.29
RTF1Q92541 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
RTF1Q92541 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
RTF1Q92541 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RTF1Q92541 KRT18P55-202ENST00000578578 1546 ntBASIC23.12■■□□□ 1.29
RTF1Q92541 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
RTF1Q92541 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RTF1Q92541 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
RTF1Q92541 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RTF1Q92541 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC23.12■■□□□ 1.29
RTF1Q92541 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC23.11■■□□□ 1.29
RTF1Q92541 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RTF1Q92541 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC23.11■■□□□ 1.29
RTF1Q92541 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
RTF1Q92541 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
RTF1Q92541 AL049757.1-201ENST00000616842 1596 ntBASIC23.11■■□□□ 1.29
RTF1Q92541 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RTF1Q92541 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC23.11■■□□□ 1.29
RTF1Q92541 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC23.11■■□□□ 1.29
RTF1Q92541 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC23.11■■□□□ 1.29
RTF1Q92541 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
RTF1Q92541 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC23.11■■□□□ 1.29
RTF1Q92541 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RTF1Q92541 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
RTF1Q92541 BX005266.1-201ENST00000473402 457 ntBASIC23.11■■□□□ 1.29
RTF1Q92541 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RTF1Q92541 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RTF1Q92541 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC23.11■■□□□ 1.29
RTF1Q92541 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RTF1Q92541 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC23.11■■□□□ 1.29
RTF1Q92541 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC23.11■■□□□ 1.29
RTF1Q92541 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RTF1Q92541 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC23.11■■□□□ 1.29
RTF1Q92541 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC23.11■■□□□ 1.29
RTF1Q92541 AC243591.1-201ENST00000452967 1364 ntBASIC23.11■■□□□ 1.29
RTF1Q92541 PC-208ENST00000529047 1607 ntTSL 3 BASIC23.11■■□□□ 1.29
RTF1Q92541 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RTF1Q92541 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RTF1Q92541 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
RTF1Q92541 AC138028.4-201ENST00000564984 1845 ntBASIC23.1■■□□□ 1.29
RTF1Q92541 ABALON-201ENST00000629058 1903 ntBASIC23.1■■□□□ 1.29
RTF1Q92541 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RTF1Q92541 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RTF1Q92541 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
RTF1Q92541 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
RTF1Q92541 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
RTF1Q92541 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC23.1■■□□□ 1.29
RTF1Q92541 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC23.1■■□□□ 1.29
RTF1Q92541 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC23.1■■□□□ 1.29
RTF1Q92541 LITAF-211ENST00000572255 516 ntTSL 4 BASIC23.1■■□□□ 1.29
RTF1Q92541 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
RTF1Q92541 MNT-208ENST00000575394 606 ntTSL 4 BASIC23.1■■□□□ 1.29
RTF1Q92541 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC23.1■■□□□ 1.29
RTF1Q92541 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
RTF1Q92541 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RTF1Q92541 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
RTF1Q92541 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
RTF1Q92541 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RTF1Q92541 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RTF1Q92541 AL353593.2-201ENST00000602529 1483 ntBASIC23.1■■□□□ 1.29
RTF1Q92541 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RTF1Q92541 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RTF1Q92541 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RTF1Q92541 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
RTF1Q92541 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
RTF1Q92541 BICD1-207ENST00000551848 1962 ntBASIC23.09■■□□□ 1.29
RTF1Q92541 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RTF1Q92541 HTR7P1-202ENST00000624664 4411 ntBASIC23.09■■□□□ 1.29
RTF1Q92541 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
RTF1Q92541 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC23.09■■□□□ 1.29
RTF1Q92541 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC23.09■■□□□ 1.29
RTF1Q92541 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC23.09■■□□□ 1.29
RTF1Q92541 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RTF1Q92541 NME4-212ENST00000621774 904 ntTSL 3 BASIC23.09■■□□□ 1.29
RTF1Q92541 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC23.09■■□□□ 1.29
RTF1Q92541 AC073592.4-201ENST00000623827 446 ntBASIC23.09■■□□□ 1.29
RTF1Q92541 AL022326.1-202ENST00000641533 845 ntBASIC23.09■■□□□ 1.29
RTF1Q92541 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RTF1Q92541 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC23.09■■□□□ 1.29
RTF1Q92541 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms