Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 PGAM5P1-201ENST00000518923 814 ntBASIC17.25■□□□□ 0.35
LMX1AQ8TE12 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 AC005593.1-201ENST00000624894 515 ntBASIC17.25■□□□□ 0.35
LMX1AQ8TE12 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 AC018445.3-201ENST00000624177 1945 ntBASIC17.25■□□□□ 0.35
LMX1AQ8TE12 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1AQ8TE12 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 AC007967.2-201ENST00000432613 625 ntBASIC17.24■□□□□ 0.35
LMX1AQ8TE12 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.24■□□□□ 0.35
LMX1AQ8TE12 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 AC100803.2-201ENST00000562459 1963 ntBASIC17.24■□□□□ 0.35
LMX1AQ8TE12 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 AL353593.2-201ENST00000602529 1483 ntBASIC17.24■□□□□ 0.35
LMX1AQ8TE12 AC098818.2-201ENST00000564925 2320 ntBASIC17.24■□□□□ 0.35
LMX1AQ8TE12 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1AQ8TE12 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 AC093503.3-201ENST00000624917 2352 ntBASIC17.23■□□□□ 0.35
LMX1AQ8TE12 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms