Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 MIR3652-201ENST00000579335 131 ntBASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 CLEC4GP1-201ENST00000596555 870 ntBASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.68■□□□□ 0.58
SCUBE3Q8IX30 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 DDX43P3-201ENST00000441064 443 ntBASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 AC099336.1-202ENST00000602961 463 ntBASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCUBE3Q8IX30 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 TP73-AS1-210ENST00000637775 1455 ntBASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 AC009533.2-201ENST00000543664 586 ntBASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 BNIP3P18-201ENST00000593976 575 ntBASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 FZD10-202ENST00000539839 3282 ntBASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 AL355312.1-201ENST00000407115 2176 ntBASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.66■□□□□ 0.58
SCUBE3Q8IX30 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCUBE3Q8IX30 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.65■□□□□ 0.58
SCUBE3Q8IX30 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.65■□□□□ 0.58
SCUBE3Q8IX30 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCUBE3Q8IX30 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCUBE3Q8IX30 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.65■□□□□ 0.58
SCUBE3Q8IX30 REXO1L11P-201ENST00000620964 1927 ntBASIC18.65■□□□□ 0.58
SCUBE3Q8IX30 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms