Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 HBZP1-201ENST00000354915 429 ntBASIC16.18■□□□□ 0.18
NIPAL3Q6P499 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.18■□□□□ 0.18
NIPAL3Q6P499 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 NTF6B-201ENST00000591913 560 ntBASIC16.18■□□□□ 0.18
NIPAL3Q6P499 AC008687.5-201ENST00000593746 558 ntBASIC16.18■□□□□ 0.18
NIPAL3Q6P499 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 AC024563.2-201ENST00000603282 481 ntBASIC16.18■□□□□ 0.18
NIPAL3Q6P499 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 AC100803.2-201ENST00000562459 1963 ntBASIC16.18■□□□□ 0.18
NIPAL3Q6P499 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.18■□□□□ 0.18
NIPAL3Q6P499 AC133963.1-201ENST00000504166 1679 ntBASIC16.18■□□□□ 0.18
NIPAL3Q6P499 AC132938.6-201ENST00000623828 1655 ntBASIC16.18■□□□□ 0.18
NIPAL3Q6P499 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 AL138688.1-201ENST00000624851 1594 ntBASIC16.17■□□□□ 0.18
NIPAL3Q6P499 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 HLA-F-220ENST00000434407 884 ntBASIC16.17■□□□□ 0.18
NIPAL3Q6P499 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 AL590326.2-201ENST00000625139 305 ntBASIC16.17■□□□□ 0.18
NIPAL3Q6P499 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 AD000864.1-201ENST00000624076 2295 ntBASIC16.17■□□□□ 0.18
NIPAL3Q6P499 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 LINC00602-201ENST00000629776 2065 ntBASIC16.17■□□□□ 0.18
NIPAL3Q6P499 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.17■□□□□ 0.18
NIPAL3Q6P499 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 AP001094.4-201ENST00000579008 2176 ntBASIC16.16■□□□□ 0.18
NIPAL3Q6P499 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 AC106820.2-201ENST00000563775 3264 ntBASIC16.16■□□□□ 0.18
NIPAL3Q6P499 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 KRT18P48-201ENST00000434763 852 ntBASIC16.16■□□□□ 0.18
NIPAL3Q6P499 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 ZNF444P1-201ENST00000559497 298 ntBASIC16.16■□□□□ 0.18
NIPAL3Q6P499 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.16■□□□□ 0.18
NIPAL3Q6P499 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms