Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 KRT8P50-201ENST00000562022 1438 ntBASIC9.59□□□□□ -0.87
UBR4Q5T4S7 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 PTCHD3P3-201ENST00000403073 906 ntBASIC9.59□□□□□ -0.87
UBR4Q5T4S7 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 FALEC-201ENST00000416894 566 ntTSL 3 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 CTBP2P3-201ENST00000585629 1255 ntBASIC9.59□□□□□ -0.87
UBR4Q5T4S7 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 TEX21P-204ENST00000641479 1693 ntBASIC9.59□□□□□ -0.87
UBR4Q5T4S7 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 ACTL9-202ENST00000612068 1252 ntBASIC9.59□□□□□ -0.87
UBR4Q5T4S7 SPDYE12P-201ENST00000618416 771 ntBASIC9.59□□□□□ -0.87
UBR4Q5T4S7 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC9.59□□□□□ -0.87
UBR4Q5T4S7 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 ASL-204ENST00000395331 1538 ntTSL 5 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 KRT8P13-201ENST00000463294 1010 ntBASIC9.58□□□□□ -0.88
UBR4Q5T4S7 AC141586.1-203ENST00000567242 366 ntBASIC9.58□□□□□ -0.88
UBR4Q5T4S7 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 AC005229.1-201ENST00000392885 409 ntBASIC9.58□□□□□ -0.88
UBR4Q5T4S7 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 MIR4453-201ENST00000584019 89 ntBASIC9.58□□□□□ -0.88
UBR4Q5T4S7 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
UBR4Q5T4S7 SIRPAP1-201ENST00000448467 1770 ntBASIC9.58□□□□□ -0.88
UBR4Q5T4S7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 COX5A-202ENST00000562233 441 ntTSL 3 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 AL590560.3-201ENST00000623350 461 ntBASIC9.57□□□□□ -0.88
UBR4Q5T4S7 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC9.57□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms