Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.2■□□□□ 0.83
LONRF3Q496Y0 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 HLA-F-220ENST00000434407 884 ntBASIC20.2■□□□□ 0.82
LONRF3Q496Y0 BX276092.5-203ENST00000456199 560 ntBASIC20.2■□□□□ 0.82
LONRF3Q496Y0 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 AC113404.2-201ENST00000507884 177 ntBASIC20.2■□□□□ 0.82
LONRF3Q496Y0 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 RNF126P1-202ENST00000569893 925 ntBASIC20.2■□□□□ 0.82
LONRF3Q496Y0 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LONRF3Q496Y0 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 ATP5G2P1-201ENST00000433580 426 ntBASIC20.19■□□□□ 0.82
LONRF3Q496Y0 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 TSSC2-201ENST00000450217 709 ntBASIC20.19■□□□□ 0.82
LONRF3Q496Y0 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.19■□□□□ 0.82
LONRF3Q496Y0 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 SIRPAP1-201ENST00000448467 1770 ntBASIC20.18■□□□□ 0.82
LONRF3Q496Y0 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 AC092329.2-201ENST00000598402 547 ntBASIC20.18■□□□□ 0.82
LONRF3Q496Y0 AC024563.2-201ENST00000603282 481 ntBASIC20.18■□□□□ 0.82
LONRF3Q496Y0 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 AC009949.1-201ENST00000623048 1830 ntBASIC20.18■□□□□ 0.82
LONRF3Q496Y0 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
LONRF3Q496Y0 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
LONRF3Q496Y0 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LONRF3Q496Y0 AC133963.1-201ENST00000504166 1679 ntBASIC20.17■□□□□ 0.82
LONRF3Q496Y0 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LONRF3Q496Y0 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.17■□□□□ 0.82
LONRF3Q496Y0 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.17■□□□□ 0.82
LONRF3Q496Y0 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.17■□□□□ 0.82
LONRF3Q496Y0 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LONRF3Q496Y0 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LONRF3Q496Y0 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LONRF3Q496Y0 AL450487.1-201ENST00000426799 995 ntBASIC20.17■□□□□ 0.82
LONRF3Q496Y0 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms