Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 KRT8P47-201ENST00000604727 1398 ntBASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTCHD3Q3KNS1 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 LINC00265-3P-201ENST00000447588 903 ntBASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 AC009949.1-201ENST00000623048 1830 ntBASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTCHD3Q3KNS1 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 AC112698.1-201ENST00000510299 916 ntBASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 TPSP2-201ENST00000561760 610 ntBASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 AC116407.2-201ENST00000613639 860 ntBASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.36■□□□□ 0.37
PTCHD3Q3KNS1 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTCHD3Q3KNS1 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms