Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 GGTLC5P-201ENST00000617623 998 ntBASIC20.11■□□□□ 0.81
CCNA1P78396 AL513190.1-201ENST00000621254 727 ntBASIC20.11■□□□□ 0.81
CCNA1P78396 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
CCNA1P78396 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CCNA1P78396 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCNA1P78396 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNA1P78396 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.11■□□□□ 0.81
CCNA1P78396 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNA1P78396 GPR89P-201ENST00000407924 1495 ntBASIC20.11■□□□□ 0.81
CCNA1P78396 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNA1P78396 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CCNA1P78396 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.1■□□□□ 0.81
CCNA1P78396 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.1■□□□□ 0.81
CCNA1P78396 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.1■□□□□ 0.81
CCNA1P78396 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
CCNA1P78396 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CCNA1P78396 PON3-203ENST00000427422 894 ntTSL 3 BASIC20.1■□□□□ 0.81
CCNA1P78396 CNN2P11-201ENST00000429351 262 ntBASIC20.1■□□□□ 0.81
CCNA1P78396 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC20.1■□□□□ 0.81
CCNA1P78396 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.1■□□□□ 0.81
CCNA1P78396 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC20.1■□□□□ 0.81
CCNA1P78396 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.1■□□□□ 0.81
CCNA1P78396 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.1■□□□□ 0.81
CCNA1P78396 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CCNA1P78396 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CCNA1P78396 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.1■□□□□ 0.81
CCNA1P78396 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.1■□□□□ 0.81
CCNA1P78396 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.1■□□□□ 0.81
CCNA1P78396 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.1■□□□□ 0.81
CCNA1P78396 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.1■□□□□ 0.81
CCNA1P78396 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNA1P78396 ELL2P1-201ENST00000413990 1906 ntBASIC20.1■□□□□ 0.81
CCNA1P78396 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
CCNA1P78396 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.09■□□□□ 0.81
CCNA1P78396 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCNA1P78396 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNA1P78396 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNA1P78396 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCNA1P78396 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNA1P78396 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CCNA1P78396 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.09■□□□□ 0.81
CCNA1P78396 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.09■□□□□ 0.81
CCNA1P78396 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
CCNA1P78396 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNA1P78396 AL096828.2-201ENST00000567259 1965 ntBASIC20.09■□□□□ 0.81
CCNA1P78396 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNA1P78396 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20.09■□□□□ 0.81
CCNA1P78396 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.09■□□□□ 0.81
CCNA1P78396 DDX43P3-201ENST00000441064 443 ntBASIC20.09■□□□□ 0.81
CCNA1P78396 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20.09■□□□□ 0.81
CCNA1P78396 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC20.09■□□□□ 0.81
CCNA1P78396 AL078644.1-201ENST00000609881 752 ntBASIC20.09■□□□□ 0.81
CCNA1P78396 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
CCNA1P78396 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCNA1P78396 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CCNA1P78396 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.08■□□□□ 0.81
CCNA1P78396 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCNA1P78396 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.08■□□□□ 0.81
CCNA1P78396 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
CCNA1P78396 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCNA1P78396 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
CCNA1P78396 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.08■□□□□ 0.81
CCNA1P78396 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCNA1P78396 CD82-202ENST00000342935 967 ntTSL 5 BASIC20.08■□□□□ 0.81
CCNA1P78396 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCNA1P78396 AP002414.1-201ENST00000391405 1147 ntBASIC20.08■□□□□ 0.81
CCNA1P78396 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC20.08■□□□□ 0.81
CCNA1P78396 CEND1P1-201ENST00000451006 455 ntBASIC20.08■□□□□ 0.81
CCNA1P78396 AC096734.2-201ENST00000562054 433 ntBASIC20.08■□□□□ 0.81
CCNA1P78396 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC20.08■□□□□ 0.81
CCNA1P78396 LINC02084-201ENST00000606069 1096 ntBASIC20.08■□□□□ 0.81
CCNA1P78396 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC20.08■□□□□ 0.81
CCNA1P78396 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCNA1P78396 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCNA1P78396 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
CCNA1P78396 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
CCNA1P78396 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.08■□□□□ 0.8
CCNA1P78396 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCNA1P78396 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCNA1P78396 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.08■□□□□ 0.8
CCNA1P78396 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCNA1P78396 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CCNA1P78396 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CCNA1P78396 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCNA1P78396 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms