Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.56■□□□□ 0.56
HDAC4P56524 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.56■□□□□ 0.56
HDAC4P56524 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.56■□□□□ 0.56
HDAC4P56524 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
HDAC4P56524 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
HDAC4P56524 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HDAC4P56524 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.56■□□□□ 0.56
HDAC4P56524 DDX43P3-201ENST00000441064 443 ntBASIC18.56■□□□□ 0.56
HDAC4P56524 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.56■□□□□ 0.56
HDAC4P56524 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.56■□□□□ 0.56
HDAC4P56524 AC091607.1-201ENST00000490318 1060 ntBASIC18.56■□□□□ 0.56
HDAC4P56524 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.56■□□□□ 0.56
HDAC4P56524 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
HDAC4P56524 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.56■□□□□ 0.56
HDAC4P56524 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.56■□□□□ 0.56
HDAC4P56524 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HDAC4P56524 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.56■□□□□ 0.56
HDAC4P56524 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC4P56524 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.55■□□□□ 0.56
HDAC4P56524 AL355312.1-201ENST00000407115 2176 ntBASIC18.55■□□□□ 0.56
HDAC4P56524 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HDAC4P56524 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
HDAC4P56524 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.55■□□□□ 0.56
HDAC4P56524 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
HDAC4P56524 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
HDAC4P56524 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.55■□□□□ 0.56
HDAC4P56524 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.55■□□□□ 0.56
HDAC4P56524 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.55■□□□□ 0.56
HDAC4P56524 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 AC005336.2-201ENST00000593183 939 ntBASIC18.55■□□□□ 0.56
HDAC4P56524 AC091076.1-201ENST00000610741 619 ntBASIC18.55■□□□□ 0.56
HDAC4P56524 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.55■□□□□ 0.56
HDAC4P56524 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.55■□□□□ 0.56
HDAC4P56524 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.55■□□□□ 0.56
HDAC4P56524 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.55■□□□□ 0.56
HDAC4P56524 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.55■□□□□ 0.56
HDAC4P56524 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
HDAC4P56524 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.55■□□□□ 0.56
HDAC4P56524 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.55■□□□□ 0.56
HDAC4P56524 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC4P56524 REXO1L11P-201ENST00000620964 1927 ntBASIC18.55■□□□□ 0.56
HDAC4P56524 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
HDAC4P56524 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
HDAC4P56524 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
HDAC4P56524 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.54■□□□□ 0.56
HDAC4P56524 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 AC096633.1-201ENST00000422446 749 ntBASIC18.54■□□□□ 0.56
HDAC4P56524 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.54■□□□□ 0.56
HDAC4P56524 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
HDAC4P56524 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.54■□□□□ 0.56
HDAC4P56524 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HDAC4P56524 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.54■□□□□ 0.56
HDAC4P56524 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
HDAC4P56524 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
HDAC4P56524 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
HDAC4P56524 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.53■□□□□ 0.56
HDAC4P56524 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.53■□□□□ 0.56
HDAC4P56524 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDAC4P56524 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDAC4P56524 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDAC4P56524 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
HDAC4P56524 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDAC4P56524 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDAC4P56524 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDAC4P56524 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms