Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
HMGCS2P54868 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGCS2P54868 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGCS2P54868 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGCS2P54868 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.4■□□□□ 0.86
HMGCS2P54868 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC20.4■□□□□ 0.86
HMGCS2P54868 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGCS2P54868 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.4■□□□□ 0.86
HMGCS2P54868 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HMGCS2P54868 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.4■□□□□ 0.86
HMGCS2P54868 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
HMGCS2P54868 IGLL3P-201ENST00000412472 434 ntBASIC20.4■□□□□ 0.86
HMGCS2P54868 HTR5BP-201ENST00000430851 1154 ntBASIC20.4■□□□□ 0.86
HMGCS2P54868 METTL21AP1-201ENST00000438852 635 ntBASIC20.4■□□□□ 0.86
HMGCS2P54868 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
HMGCS2P54868 SNHG9-202ENST00000564014 471 ntBASIC20.4■□□□□ 0.86
HMGCS2P54868 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC20.4■□□□□ 0.86
HMGCS2P54868 STK25P1-201ENST00000585406 838 ntBASIC20.4■□□□□ 0.86
HMGCS2P54868 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HMGCS2P54868 AL078644.1-201ENST00000609881 752 ntBASIC20.4■□□□□ 0.86
HMGCS2P54868 C20orf181-201ENST00000623918 480 ntBASIC20.4■□□□□ 0.86
HMGCS2P54868 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
HMGCS2P54868 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGCS2P54868 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.4■□□□□ 0.86
HMGCS2P54868 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGCS2P54868 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HMGCS2P54868 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGCS2P54868 AC135776.1-201ENST00000319817 2481 ntBASIC20.39■□□□□ 0.86
HMGCS2P54868 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
HMGCS2P54868 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HMGCS2P54868 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HMGCS2P54868 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.39■□□□□ 0.86
HMGCS2P54868 GPR89P-201ENST00000407924 1495 ntBASIC20.39■□□□□ 0.85
HMGCS2P54868 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
HMGCS2P54868 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC20.39■□□□□ 0.85
HMGCS2P54868 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC20.39■□□□□ 0.85
HMGCS2P54868 STK19B-204ENST00000512515 211 ntBASIC20.39■□□□□ 0.85
HMGCS2P54868 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.39■□□□□ 0.85
HMGCS2P54868 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
HMGCS2P54868 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGCS2P54868 WIZP1-201ENST00000531444 2299 ntBASIC20.39■□□□□ 0.85
HMGCS2P54868 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGCS2P54868 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.39■□□□□ 0.85
HMGCS2P54868 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
HMGCS2P54868 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGCS2P54868 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
HMGCS2P54868 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGCS2P54868 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HMGCS2P54868 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.38■□□□□ 0.85
HMGCS2P54868 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.38■□□□□ 0.85
HMGCS2P54868 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.38■□□□□ 0.85
HMGCS2P54868 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGCS2P54868 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGCS2P54868 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGCS2P54868 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGCS2P54868 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HMGCS2P54868 AC097637.2-201ENST00000624096 1997 ntBASIC20.38■□□□□ 0.85
HMGCS2P54868 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGCS2P54868 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGCS2P54868 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HMGCS2P54868 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC20.38■□□□□ 0.85
HMGCS2P54868 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.38■□□□□ 0.85
HMGCS2P54868 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC20.38■□□□□ 0.85
HMGCS2P54868 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.38■□□□□ 0.85
HMGCS2P54868 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.38■□□□□ 0.85
HMGCS2P54868 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.38■□□□□ 0.85
HMGCS2P54868 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
HMGCS2P54868 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC20.38■□□□□ 0.85
HMGCS2P54868 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC20.38■□□□□ 0.85
HMGCS2P54868 AC116407.2-201ENST00000613639 860 ntBASIC20.38■□□□□ 0.85
HMGCS2P54868 AL805961.1-202ENST00000641562 540 ntBASIC20.38■□□□□ 0.85
HMGCS2P54868 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGCS2P54868 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
HMGCS2P54868 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.38■□□□□ 0.85
HMGCS2P54868 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HMGCS2P54868 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGCS2P54868 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.38■□□□□ 0.85
HMGCS2P54868 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGCS2P54868 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.38■□□□□ 0.85
HMGCS2P54868 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
HMGCS2P54868 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.37■□□□□ 0.85
HMGCS2P54868 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.37■□□□□ 0.85
HMGCS2P54868 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.37■□□□□ 0.85
HMGCS2P54868 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 CD82-202ENST00000342935 967 ntTSL 5 BASIC20.37■□□□□ 0.85
HMGCS2P54868 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC20.37■□□□□ 0.85
HMGCS2P54868 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
HMGCS2P54868 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC20.37■□□□□ 0.85
HMGCS2P54868 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.37■□□□□ 0.85
HMGCS2P54868 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.37■□□□□ 0.85
HMGCS2P54868 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC20.37■□□□□ 0.85
HMGCS2P54868 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms