Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MRE11P49959 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MRE11P49959 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MRE11P49959 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.72■□□□□ 0.91
MRE11P49959 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
MRE11P49959 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.72■□□□□ 0.91
MRE11P49959 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.71■□□□□ 0.91
MRE11P49959 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.71■□□□□ 0.91
MRE11P49959 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 SLC25A3P1-201ENST00000443844 931 ntBASIC20.71■□□□□ 0.91
MRE11P49959 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.71■□□□□ 0.91
MRE11P49959 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.71■□□□□ 0.91
MRE11P49959 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.71■□□□□ 0.91
MRE11P49959 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
MRE11P49959 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
MRE11P49959 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.91
MRE11P49959 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 FRMD6-AS1-201ENST00000617151 2229 ntBASIC20.7■□□□□ 0.9
MRE11P49959 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC20.7■□□□□ 0.9
MRE11P49959 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.7■□□□□ 0.9
MRE11P49959 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 AC009947.2-201ENST00000444014 672 ntBASIC20.7■□□□□ 0.9
MRE11P49959 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.7■□□□□ 0.9
MRE11P49959 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.7■□□□□ 0.9
MRE11P49959 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.7■□□□□ 0.9
MRE11P49959 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC20.7■□□□□ 0.9
MRE11P49959 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
MRE11P49959 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MRE11P49959 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
MRE11P49959 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC20.69■□□□□ 0.9
MRE11P49959 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.69■□□□□ 0.9
MRE11P49959 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
MRE11P49959 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
MRE11P49959 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC20.69■□□□□ 0.9
MRE11P49959 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC20.69■□□□□ 0.9
MRE11P49959 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
MRE11P49959 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.69■□□□□ 0.9
MRE11P49959 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
MRE11P49959 FUK-207ENST00000571514 3054 ntTSL 2 BASIC20.69■□□□□ 0.9
MRE11P49959 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
MRE11P49959 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.69■□□□□ 0.9
MRE11P49959 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.69■□□□□ 0.9
MRE11P49959 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
MRE11P49959 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.69■□□□□ 0.9
MRE11P49959 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.69■□□□□ 0.9
MRE11P49959 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.69■□□□□ 0.9
MRE11P49959 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.69■□□□□ 0.9
MRE11P49959 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.69■□□□□ 0.9
MRE11P49959 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.69■□□□□ 0.9
MRE11P49959 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms