Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.99■□□□□ 0.31
MSX2P35548 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.99■□□□□ 0.31
MSX2P35548 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
MSX2P35548 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
MSX2P35548 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.99■□□□□ 0.31
MSX2P35548 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.99■□□□□ 0.31
MSX2P35548 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.99■□□□□ 0.31
MSX2P35548 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
MSX2P35548 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
MSX2P35548 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.99■□□□□ 0.31
MSX2P35548 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.98■□□□□ 0.31
MSX2P35548 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC16.98■□□□□ 0.31
MSX2P35548 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.98■□□□□ 0.31
MSX2P35548 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
MSX2P35548 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.98■□□□□ 0.31
MSX2P35548 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
MSX2P35548 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
MSX2P35548 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.98■□□□□ 0.31
MSX2P35548 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC16.98■□□□□ 0.31
MSX2P35548 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.98■□□□□ 0.31
MSX2P35548 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC16.98■□□□□ 0.31
MSX2P35548 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.98■□□□□ 0.31
MSX2P35548 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
MSX2P35548 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSX2P35548 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
MSX2P35548 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
MSX2P35548 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
MSX2P35548 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.98■□□□□ 0.31
MSX2P35548 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
MSX2P35548 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
MSX2P35548 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
MSX2P35548 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.97■□□□□ 0.31
MSX2P35548 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.97■□□□□ 0.31
MSX2P35548 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
MSX2P35548 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.97■□□□□ 0.31
MSX2P35548 RN7SL471P-201ENST00000580476 299 ntBASIC16.97■□□□□ 0.31
MSX2P35548 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.97■□□□□ 0.31
MSX2P35548 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.97■□□□□ 0.31
MSX2P35548 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC16.97■□□□□ 0.31
MSX2P35548 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
MSX2P35548 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
MSX2P35548 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
MSX2P35548 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.97■□□□□ 0.31
MSX2P35548 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSX2P35548 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
MSX2P35548 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
MSX2P35548 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSX2P35548 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.96■□□□□ 0.31
MSX2P35548 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.96■□□□□ 0.31
MSX2P35548 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.96■□□□□ 0.31
MSX2P35548 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSX2P35548 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.96■□□□□ 0.31
MSX2P35548 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSX2P35548 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSX2P35548 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSX2P35548 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSX2P35548 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC16.96■□□□□ 0.31
MSX2P35548 SLC25A1P4-201ENST00000567977 778 ntBASIC16.96■□□□□ 0.31
MSX2P35548 AF186192.3-201ENST00000583427 947 ntBASIC16.96■□□□□ 0.31
MSX2P35548 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
MSX2P35548 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
MSX2P35548 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.96■□□□□ 0.31
MSX2P35548 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms