Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SMARCA1P28370 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCA1P28370 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.34■□□□□ 0.85
SMARCA1P28370 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCA1P28370 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
SMARCA1P28370 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
SMARCA1P28370 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCA1P28370 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.33■□□□□ 0.85
SMARCA1P28370 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
SMARCA1P28370 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCA1P28370 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.33■□□□□ 0.85
SMARCA1P28370 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
SMARCA1P28370 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCA1P28370 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCA1P28370 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCA1P28370 SPDYE21P-201ENST00000413323 827 ntBASIC20.33■□□□□ 0.85
SMARCA1P28370 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCA1P28370 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCA1P28370 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCA1P28370 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.33■□□□□ 0.85
SMARCA1P28370 AL160237.2-201ENST00000556165 472 ntBASIC20.33■□□□□ 0.85
SMARCA1P28370 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.33■□□□□ 0.85
SMARCA1P28370 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCA1P28370 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
SMARCA1P28370 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.33■□□□□ 0.84
SMARCA1P28370 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMARCA1P28370 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
SMARCA1P28370 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMARCA1P28370 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMARCA1P28370 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMARCA1P28370 GNAS-203ENST00000306120 1878 ntBASIC20.33■□□□□ 0.84
SMARCA1P28370 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.32■□□□□ 0.84
SMARCA1P28370 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCA1P28370 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.32■□□□□ 0.84
SMARCA1P28370 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SMARCA1P28370 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCA1P28370 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCA1P28370 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.32■□□□□ 0.84
SMARCA1P28370 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCA1P28370 SCARNA2-201ENST00000458748 420 ntBASIC20.32■□□□□ 0.84
SMARCA1P28370 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.32■□□□□ 0.84
SMARCA1P28370 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
SMARCA1P28370 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.32■□□□□ 0.84
SMARCA1P28370 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCA1P28370 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.32■□□□□ 0.84
SMARCA1P28370 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCA1P28370 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCA1P28370 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCA1P28370 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCA1P28370 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.31■□□□□ 0.84
SMARCA1P28370 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 AL356309.3-201ENST00000624132 1934 ntBASIC20.31■□□□□ 0.84
SMARCA1P28370 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.31■□□□□ 0.84
SMARCA1P28370 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.31■□□□□ 0.84
SMARCA1P28370 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.31■□□□□ 0.84
SMARCA1P28370 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.31■□□□□ 0.84
SMARCA1P28370 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.31■□□□□ 0.84
SMARCA1P28370 AL020989.1-201ENST00000422979 469 ntBASIC20.31■□□□□ 0.84
SMARCA1P28370 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.31■□□□□ 0.84
SMARCA1P28370 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SMARCA1P28370 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 AL031008.1-201ENST00000619963 541 ntBASIC20.31■□□□□ 0.84
SMARCA1P28370 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SMARCA1P28370 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.31■□□□□ 0.84
SMARCA1P28370 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.31■□□□□ 0.84
SMARCA1P28370 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.31■□□□□ 0.84
SMARCA1P28370 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.31■□□□□ 0.84
SMARCA1P28370 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SMARCA1P28370 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SMARCA1P28370 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCA1P28370 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SMARCA1P28370 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.3■□□□□ 0.84
SMARCA1P28370 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCA1P28370 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.3■□□□□ 0.84
SMARCA1P28370 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCA1P28370 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCA1P28370 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
SMARCA1P28370 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCA1P28370 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.3■□□□□ 0.84
SMARCA1P28370 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SMARCA1P28370 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.3■□□□□ 0.84
SMARCA1P28370 AC079781.3-201ENST00000449110 356 ntBASIC20.3■□□□□ 0.84
SMARCA1P28370 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
SMARCA1P28370 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SMARCA1P28370 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCA1P28370 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.3■□□□□ 0.84
SMARCA1P28370 AL139327.4-201ENST00000612362 153 ntBASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms