Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
MSX1P28360 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX1P28360 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSX1P28360 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX1P28360 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
MSX1P28360 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.28■□□□□ 0.2
MSX1P28360 DDX43P3-201ENST00000441064 443 ntBASIC16.28■□□□□ 0.2
MSX1P28360 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.28■□□□□ 0.2
MSX1P28360 AC106795.1-205ENST00000512851 1056 ntBASIC16.28■□□□□ 0.2
MSX1P28360 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.28■□□□□ 0.2
MSX1P28360 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX1P28360 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.28■□□□□ 0.2
MSX1P28360 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.28■□□□□ 0.2
MSX1P28360 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX1P28360 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.28■□□□□ 0.2
MSX1P28360 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSX1P28360 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSX1P28360 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.28■□□□□ 0.2
MSX1P28360 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSX1P28360 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
MSX1P28360 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
MSX1P28360 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.28■□□□□ 0.2
MSX1P28360 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
MSX1P28360 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX1P28360 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX1P28360 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX1P28360 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.28■□□□□ 0.2
MSX1P28360 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX1P28360 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.27■□□□□ 0.2
MSX1P28360 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.27■□□□□ 0.2
MSX1P28360 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
MSX1P28360 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.27■□□□□ 0.2
MSX1P28360 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.27■□□□□ 0.2
MSX1P28360 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
MSX1P28360 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
MSX1P28360 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.27■□□□□ 0.2
MSX1P28360 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.27■□□□□ 0.2
MSX1P28360 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
MSX1P28360 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
MSX1P28360 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.27■□□□□ 0.2
MSX1P28360 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.27■□□□□ 0.2
MSX1P28360 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.27■□□□□ 0.2
MSX1P28360 AP002469.2-201ENST00000531724 424 ntBASIC16.27■□□□□ 0.2
MSX1P28360 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.27■□□□□ 0.2
MSX1P28360 AC074051.2-201ENST00000565115 352 ntBASIC16.27■□□□□ 0.2
MSX1P28360 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.27■□□□□ 0.2
MSX1P28360 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
MSX1P28360 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
MSX1P28360 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.27■□□□□ 0.2
MSX1P28360 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
MSX1P28360 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.27■□□□□ 0.2
MSX1P28360 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX1P28360 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.27■□□□□ 0.2
MSX1P28360 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
MSX1P28360 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
MSX1P28360 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.27■□□□□ 0.19
MSX1P28360 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.27■□□□□ 0.19
MSX1P28360 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.27■□□□□ 0.19
MSX1P28360 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.27■□□□□ 0.19
MSX1P28360 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.27■□□□□ 0.19
MSX1P28360 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.27■□□□□ 0.19
MSX1P28360 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSX1P28360 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.27■□□□□ 0.19
MSX1P28360 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
MSX1P28360 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
MSX1P28360 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
MSX1P28360 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.26■□□□□ 0.19
MSX1P28360 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 AC096633.1-201ENST00000422446 749 ntBASIC16.26■□□□□ 0.19
MSX1P28360 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms