Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
MSH3P20585 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
MSH3P20585 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
MSH3P20585 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.7■□□□□ 0.42
MSH3P20585 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.7■□□□□ 0.42
MSH3P20585 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
MSH3P20585 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.7■□□□□ 0.42
MSH3P20585 AC246785.2-201ENST00000432512 513 ntBASIC17.7■□□□□ 0.42
MSH3P20585 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.7■□□□□ 0.42
MSH3P20585 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.7■□□□□ 0.42
MSH3P20585 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.7■□□□□ 0.42
MSH3P20585 MIR3180-1-201ENST00000580374 94 ntBASIC17.7■□□□□ 0.42
MSH3P20585 MIR3180-3-201ENST00000584616 94 ntBASIC17.7■□□□□ 0.42
MSH3P20585 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.7■□□□□ 0.42
MSH3P20585 Z69720.1-201ENST00000601483 472 ntBASIC17.7■□□□□ 0.42
MSH3P20585 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.7■□□□□ 0.42
MSH3P20585 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
MSH3P20585 KRT18P55-202ENST00000578578 1546 ntBASIC17.7■□□□□ 0.42
MSH3P20585 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.7■□□□□ 0.42
MSH3P20585 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
MSH3P20585 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
MSH3P20585 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
MSH3P20585 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
MSH3P20585 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
MSH3P20585 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.7■□□□□ 0.42
MSH3P20585 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
MSH3P20585 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
MSH3P20585 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSH3P20585 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.69■□□□□ 0.42
MSH3P20585 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSH3P20585 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
MSH3P20585 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
MSH3P20585 HCG4P8-203ENST00000443049 980 ntBASIC17.69■□□□□ 0.42
MSH3P20585 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.69■□□□□ 0.42
MSH3P20585 AP000867.3-201ENST00000524675 377 ntBASIC17.69■□□□□ 0.42
MSH3P20585 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.69■□□□□ 0.42
MSH3P20585 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.69■□□□□ 0.42
MSH3P20585 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.69■□□□□ 0.42
MSH3P20585 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH3P20585 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.69■□□□□ 0.42
MSH3P20585 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.69■□□□□ 0.42
MSH3P20585 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSH3P20585 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH3P20585 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
MSH3P20585 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH3P20585 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSH3P20585 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
MSH3P20585 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.69■□□□□ 0.42
MSH3P20585 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH3P20585 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
MSH3P20585 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
MSH3P20585 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.69■□□□□ 0.42
MSH3P20585 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH3P20585 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH3P20585 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.69■□□□□ 0.42
MSH3P20585 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH3P20585 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
MSH3P20585 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.68■□□□□ 0.42
MSH3P20585 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 AC233702.3-201ENST00000578656 1387 ntBASIC17.68■□□□□ 0.42
MSH3P20585 KRT8P47-201ENST00000604727 1398 ntBASIC17.68■□□□□ 0.42
MSH3P20585 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 FZD10-202ENST00000539839 3282 ntBASIC17.68■□□□□ 0.42
MSH3P20585 AC100803.2-201ENST00000562459 1963 ntBASIC17.68■□□□□ 0.42
MSH3P20585 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.68■□□□□ 0.42
MSH3P20585 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
MSH3P20585 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
MSH3P20585 AL845331.1-201ENST00000424978 1190 ntBASIC17.68■□□□□ 0.42
MSH3P20585 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.68■□□□□ 0.42
MSH3P20585 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.68■□□□□ 0.42
MSH3P20585 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms