Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A3P12111 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A3P12111 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A3P12111 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
COL6A3P12111 FAM185BP-201ENST00000443595 716 ntBASIC18.33■□□□□ 0.52
COL6A3P12111 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A3P12111 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.33■□□□□ 0.52
COL6A3P12111 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.33■□□□□ 0.52
COL6A3P12111 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.33■□□□□ 0.52
COL6A3P12111 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.33■□□□□ 0.52
COL6A3P12111 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.32■□□□□ 0.52
COL6A3P12111 AC104794.3-201ENST00000566840 1248 ntBASIC18.32■□□□□ 0.52
COL6A3P12111 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
COL6A3P12111 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A3P12111 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.32■□□□□ 0.52
COL6A3P12111 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A3P12111 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.32■□□□□ 0.52
COL6A3P12111 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A3P12111 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A3P12111 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL6A3P12111 ACTBP11-201ENST00000436287 1126 ntBASIC18.32■□□□□ 0.52
COL6A3P12111 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A3P12111 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A3P12111 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A3P12111 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A3P12111 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A3P12111 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
COL6A3P12111 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A3P12111 AL355994.2-201ENST00000447882 704 ntBASIC18.32■□□□□ 0.52
COL6A3P12111 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
COL6A3P12111 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.32■□□□□ 0.52
COL6A3P12111 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A3P12111 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
COL6A3P12111 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
COL6A3P12111 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A3P12111 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.31■□□□□ 0.52
COL6A3P12111 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A3P12111 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A3P12111 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A3P12111 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC18.31■□□□□ 0.52
COL6A3P12111 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.31■□□□□ 0.52
COL6A3P12111 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
COL6A3P12111 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL6A3P12111 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A3P12111 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.31■□□□□ 0.52
COL6A3P12111 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A3P12111 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC18.31■□□□□ 0.52
COL6A3P12111 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A3P12111 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.31■□□□□ 0.52
COL6A3P12111 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A3P12111 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A3P12111 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A3P12111 MIR1908-201ENST00000410394 80 ntBASIC18.31■□□□□ 0.52
COL6A3P12111 AL671277.1-201ENST00000429656 993 ntBASIC18.31■□□□□ 0.52
COL6A3P12111 CXCL1P1-201ENST00000502804 216 ntBASIC18.31■□□□□ 0.52
COL6A3P12111 ZNF767P-206ENST00000513792 565 ntBASIC18.31■□□□□ 0.52
COL6A3P12111 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A3P12111 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A3P12111 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A3P12111 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL6A3P12111 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL6A3P12111 AC132938.6-201ENST00000623828 1655 ntBASIC18.3■□□□□ 0.52
COL6A3P12111 SPCS2P4-201ENST00000436160 681 ntBASIC18.3■□□□□ 0.52
COL6A3P12111 ACTL9-202ENST00000612068 1252 ntBASIC18.3■□□□□ 0.52
COL6A3P12111 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.3■□□□□ 0.52
COL6A3P12111 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A3P12111 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A3P12111 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A3P12111 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.3■□□□□ 0.52
COL6A3P12111 MIR663B-201ENST00000408361 115 ntBASIC18.3■□□□□ 0.52
COL6A3P12111 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.3■□□□□ 0.52
COL6A3P12111 AL512343.1-201ENST00000605837 169 ntBASIC18.3■□□□□ 0.52
COL6A3P12111 GGTLC5P-201ENST00000617623 998 ntBASIC18.3■□□□□ 0.52
COL6A3P12111 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A3P12111 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A3P12111 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A3P12111 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
COL6A3P12111 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A3P12111 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL6A3P12111 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A3P12111 RN7SL837P-201ENST00000463010 287 ntBASIC18.3■□□□□ 0.52
COL6A3P12111 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A3P12111 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.3■□□□□ 0.52
COL6A3P12111 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.29■□□□□ 0.52
COL6A3P12111 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.29■□□□□ 0.52
COL6A3P12111 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A3P12111 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A3P12111 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A3P12111 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A3P12111 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A3P12111 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A3P12111 KLF4P1-201ENST00000412782 1185 ntBASIC18.29■□□□□ 0.52
COL6A3P12111 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC18.29■□□□□ 0.52
COL6A3P12111 MIR6775-201ENST00000617557 69 ntBASIC18.29■□□□□ 0.52
COL6A3P12111 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A3P12111 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A3P12111 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A3P12111 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A3P12111 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
COL6A3P12111 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms