Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.87■□□□□ 0.93
HLA-DOAP06340 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.87■□□□□ 0.93
HLA-DOAP06340 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.87■□□□□ 0.93
HLA-DOAP06340 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.87■□□□□ 0.93
HLA-DOAP06340 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.87■□□□□ 0.93
HLA-DOAP06340 AC109462.3-201ENST00000573934 613 ntBASIC20.87■□□□□ 0.93
HLA-DOAP06340 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.87■□□□□ 0.93
HLA-DOAP06340 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC20.87■□□□□ 0.93
HLA-DOAP06340 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.87■□□□□ 0.93
HLA-DOAP06340 AC019129.2-201ENST00000609837 1235 ntBASIC20.87■□□□□ 0.93
HLA-DOAP06340 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
HLA-DOAP06340 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DOAP06340 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.87■□□□□ 0.93
HLA-DOAP06340 AP000997.3-201ENST00000623333 2250 ntBASIC20.87■□□□□ 0.93
HLA-DOAP06340 AC004408.2-201ENST00000623613 2777 ntBASIC20.86■□□□□ 0.93
HLA-DOAP06340 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DOAP06340 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DOAP06340 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DOAP06340 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DOAP06340 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 AL020996.1-203ENST00000536896 2307 ntBASIC20.86■□□□□ 0.93
HLA-DOAP06340 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 KRT18P13-201ENST00000400056 1290 ntBASIC20.86■□□□□ 0.93
HLA-DOAP06340 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 AC034105.1-201ENST00000563488 319 ntBASIC20.86■□□□□ 0.93
HLA-DOAP06340 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 AL356488.2-201ENST00000602755 427 ntBASIC20.86■□□□□ 0.93
HLA-DOAP06340 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DOAP06340 AL589182.2-201ENST00000619332 1049 ntBASIC20.86■□□□□ 0.93
HLA-DOAP06340 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DOAP06340 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DOAP06340 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.86■□□□□ 0.93
HLA-DOAP06340 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
HLA-DOAP06340 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.85■□□□□ 0.93
HLA-DOAP06340 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.85■□□□□ 0.93
HLA-DOAP06340 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.85■□□□□ 0.93
HLA-DOAP06340 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DOAP06340 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.85■□□□□ 0.93
HLA-DOAP06340 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
HLA-DOAP06340 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DOAP06340 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
HLA-DOAP06340 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DOAP06340 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.85■□□□□ 0.93
HLA-DOAP06340 MED15P5-201ENST00000423150 992 ntBASIC20.85■□□□□ 0.93
HLA-DOAP06340 KRT18P27-201ENST00000427733 1299 ntBASIC20.85■□□□□ 0.93
HLA-DOAP06340 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.85■□□□□ 0.93
HLA-DOAP06340 IGHV3-52-201ENST00000519770 353 ntBASIC20.85■□□□□ 0.93
HLA-DOAP06340 UNC93B6-202ENST00000528242 690 ntBASIC20.85■□□□□ 0.93
HLA-DOAP06340 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.85■□□□□ 0.93
HLA-DOAP06340 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.85■□□□□ 0.93
HLA-DOAP06340 AC005593.1-201ENST00000624894 515 ntBASIC20.85■□□□□ 0.93
HLA-DOAP06340 PGM5P2-202ENST00000637225 1043 ntBASIC20.85■□□□□ 0.93
HLA-DOAP06340 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DOAP06340 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DOAP06340 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DOAP06340 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DOAP06340 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DOAP06340 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DOAP06340 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DOAP06340 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms