Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.33■□□□□ 0.36
SDC3O75056 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.33■□□□□ 0.36
SDC3O75056 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SDC3O75056 AC009947.1-201ENST00000444350 727 ntBASIC17.33■□□□□ 0.36
SDC3O75056 AC122714.2-201ENST00000502787 707 ntBASIC17.33■□□□□ 0.36
SDC3O75056 RNA5SP416-201ENST00000516838 111 ntBASIC17.33■□□□□ 0.36
SDC3O75056 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDC3O75056 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.33■□□□□ 0.36
SDC3O75056 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.33■□□□□ 0.36
SDC3O75056 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.33■□□□□ 0.36
SDC3O75056 AL139424.1-201ENST00000607572 797 ntBASIC17.33■□□□□ 0.36
SDC3O75056 AD001527.2-201ENST00000622994 785 ntBASIC17.33■□□□□ 0.36
SDC3O75056 AC073592.5-201ENST00000624854 528 ntBASIC17.33■□□□□ 0.36
SDC3O75056 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDC3O75056 BCL2-203ENST00000589955 5011 ntBASIC17.33■□□□□ 0.36
SDC3O75056 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDC3O75056 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDC3O75056 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SDC3O75056 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SDC3O75056 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDC3O75056 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDC3O75056 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SDC3O75056 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SDC3O75056 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SDC3O75056 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SDC3O75056 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SDC3O75056 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SDC3O75056 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SDC3O75056 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SDC3O75056 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.32■□□□□ 0.36
SDC3O75056 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SDC3O75056 AC023274.1-201ENST00000418278 595 ntBASIC17.32■□□□□ 0.36
SDC3O75056 UPF3AP3-201ENST00000420996 769 ntBASIC17.32■□□□□ 0.36
SDC3O75056 RPS8P6-201ENST00000426177 609 ntBASIC17.32■□□□□ 0.36
SDC3O75056 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.32■□□□□ 0.36
SDC3O75056 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SDC3O75056 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.32■□□□□ 0.36
SDC3O75056 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.32■□□□□ 0.36
SDC3O75056 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.32■□□□□ 0.36
SDC3O75056 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SDC3O75056 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.32■□□□□ 0.36
SDC3O75056 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SDC3O75056 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.32■□□□□ 0.36
SDC3O75056 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SDC3O75056 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.32■□□□□ 0.36
SDC3O75056 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.32■□□□□ 0.36
SDC3O75056 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SDC3O75056 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
SDC3O75056 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SDC3O75056 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SDC3O75056 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.31■□□□□ 0.36
SDC3O75056 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
SDC3O75056 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SDC3O75056 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.31■□□□□ 0.36
SDC3O75056 AC022898.2-201ENST00000616822 1312 ntBASIC17.31■□□□□ 0.36
SDC3O75056 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.31■□□□□ 0.36
SDC3O75056 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.31■□□□□ 0.36
SDC3O75056 YBX2P1-201ENST00000394192 760 ntBASIC17.31■□□□□ 0.36
SDC3O75056 SPDYE21P-201ENST00000413323 827 ntBASIC17.31■□□□□ 0.36
SDC3O75056 GPX1P2-201ENST00000429271 606 ntBASIC17.31■□□□□ 0.36
SDC3O75056 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.31■□□□□ 0.36
SDC3O75056 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.31■□□□□ 0.36
SDC3O75056 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.31■□□□□ 0.36
SDC3O75056 AC040169.1-201ENST00000565382 521 ntBASIC17.31■□□□□ 0.36
SDC3O75056 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.31■□□□□ 0.36
SDC3O75056 AC005593.1-201ENST00000624894 515 ntBASIC17.31■□□□□ 0.36
SDC3O75056 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.31■□□□□ 0.36
SDC3O75056 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
SDC3O75056 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SDC3O75056 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SDC3O75056 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDC3O75056 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SDC3O75056 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.31■□□□□ 0.36
SDC3O75056 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.3■□□□□ 0.36
SDC3O75056 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDC3O75056 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDC3O75056 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
SDC3O75056 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDC3O75056 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDC3O75056 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDC3O75056 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDC3O75056 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SDC3O75056 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SDC3O75056 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.3■□□□□ 0.36
SDC3O75056 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms