Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 PC-208ENST00000529047 1607 ntTSL 3 BASIC28.43■■■□□ 2.14
CHD1O14646 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC28.43■■■□□ 2.14
CHD1O14646 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
CHD1O14646 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC28.43■■■□□ 2.14
CHD1O14646 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC28.43■■■□□ 2.14
CHD1O14646 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
CHD1O14646 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
CHD1O14646 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC28.43■■■□□ 2.14
CHD1O14646 TMED1-207ENST00000591695 809 ntTSL 5 BASIC28.43■■■□□ 2.14
CHD1O14646 AC017083.2-201ENST00000608069 979 ntBASIC28.43■■■□□ 2.14
CHD1O14646 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC28.43■■■□□ 2.14
CHD1O14646 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC28.43■■■□□ 2.14
CHD1O14646 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
CHD1O14646 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC28.42■■■□□ 2.14
CHD1O14646 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
CHD1O14646 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
CHD1O14646 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC28.42■■■□□ 2.14
CHD1O14646 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CHD1O14646 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC28.42■■■□□ 2.14
CHD1O14646 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CHD1O14646 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC28.42■■■□□ 2.14
CHD1O14646 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
CHD1O14646 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CHD1O14646 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC28.42■■■□□ 2.14
CHD1O14646 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC28.42■■■□□ 2.14
CHD1O14646 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CHD1O14646 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
CHD1O14646 AC022144.1-201ENST00000602255 1580 ntBASIC28.42■■■□□ 2.14
CHD1O14646 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
CHD1O14646 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
CHD1O14646 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC28.41■■■□□ 2.14
CHD1O14646 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC28.41■■■□□ 2.14
CHD1O14646 GIMAP3P-201ENST00000495150 836 ntBASIC28.41■■■□□ 2.14
CHD1O14646 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC28.41■■■□□ 2.14
CHD1O14646 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC28.41■■■□□ 2.14
CHD1O14646 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
CHD1O14646 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC28.41■■■□□ 2.14
CHD1O14646 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
CHD1O14646 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
CHD1O14646 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
CHD1O14646 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
CHD1O14646 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC28.41■■■□□ 2.14
CHD1O14646 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC28.41■■■□□ 2.14
CHD1O14646 AL032819.2-201ENST00000624543 2162 ntBASIC28.41■■■□□ 2.14
CHD1O14646 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC28.41■■■□□ 2.14
CHD1O14646 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC28.4■■■□□ 2.14
CHD1O14646 RPS2P32-201ENST00000439199 892 ntBASIC28.4■■■□□ 2.14
CHD1O14646 SPTLC1P1-201ENST00000447199 261 ntBASIC28.4■■■□□ 2.14
CHD1O14646 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC28.4■■■□□ 2.14
CHD1O14646 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC28.4■■■□□ 2.14
CHD1O14646 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC28.4■■■□□ 2.14
CHD1O14646 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC28.4■■■□□ 2.14
CHD1O14646 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 SLC25A6P5-201ENST00000435663 894 ntBASIC28.4■■■□□ 2.14
CHD1O14646 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC28.4■■■□□ 2.14
CHD1O14646 WASH4P-201ENST00000564273 1246 ntBASIC28.4■■■□□ 2.14
CHD1O14646 SNX12-206ENST00000622259 661 ntTSL 5 BASIC28.4■■■□□ 2.14
CHD1O14646 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CHD1O14646 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC28.39■■■□□ 2.14
CHD1O14646 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC28.39■■■□□ 2.14
CHD1O14646 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.14
CHD1O14646 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC28.39■■■□□ 2.14
CHD1O14646 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC28.39■■■□□ 2.14
CHD1O14646 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC28.39■■■□□ 2.14
CHD1O14646 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CHD1O14646 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC28.39■■■□□ 2.14
CHD1O14646 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.14
CHD1O14646 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC28.39■■■□□ 2.13
CHD1O14646 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.13
CHD1O14646 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC28.38■■■□□ 2.13
CHD1O14646 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC28.38■■■□□ 2.13
CHD1O14646 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC28.38■■■□□ 2.13
CHD1O14646 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
CHD1O14646 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC28.38■■■□□ 2.13
CHD1O14646 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC28.38■■■□□ 2.13
CHD1O14646 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
CHD1O14646 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms