Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 AC109322.1-201ENST00000524499 1264 ntBASIC30.5■■■□□ 2.47
CCDC88BA6NC98 MED16-214ENST00000617672 554 ntTSL 5 BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 DDT-204ENST00000404092 805 ntTSL 3 BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 BCRP1-201ENST00000444246 691 ntBASIC30.49■■■□□ 2.47
CCDC88BA6NC98 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CCDC88BA6NC98 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 SYS1-203ENST00000414310 795 ntTSL 3 BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC88BA6NC98 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 AC007064.4-201ENST00000637740 555 ntBASIC30.47■■■□□ 2.47
CCDC88BA6NC98 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC88BA6NC98 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC30.46■■■□□ 2.47
CCDC88BA6NC98 CYP51A1P2-201ENST00000419457 1499 ntBASIC30.46■■■□□ 2.47
CCDC88BA6NC98 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC30.46■■■□□ 2.47
CCDC88BA6NC98 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC30.46■■■□□ 2.47
CCDC88BA6NC98 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC30.46■■■□□ 2.47
CCDC88BA6NC98 PAWRP1-201ENST00000451083 565 ntBASIC30.46■■■□□ 2.47
CCDC88BA6NC98 HLA-J-203ENST00000494367 1087 ntBASIC30.46■■■□□ 2.47
CCDC88BA6NC98 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC30.46■■■□□ 2.47
CCDC88BA6NC98 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC30.46■■■□□ 2.47
CCDC88BA6NC98 AC093520.2-201ENST00000561830 333 ntBASIC30.46■■■□□ 2.47
CCDC88BA6NC98 IGHV3OR16-6-201ENST00000568775 360 ntBASIC30.46■■■□□ 2.47
CCDC88BA6NC98 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC30.46■■■□□ 2.47
CCDC88BA6NC98 AC116407.2-201ENST00000613639 860 ntBASIC30.46■■■□□ 2.47
CCDC88BA6NC98 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC30.46■■■□□ 2.47
CCDC88BA6NC98 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC30.46■■■□□ 2.47
CCDC88BA6NC98 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC30.46■■■□□ 2.47
CCDC88BA6NC98 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
CCDC88BA6NC98 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
CCDC88BA6NC98 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
CCDC88BA6NC98 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC30.45■■■□□ 2.47
CCDC88BA6NC98 LSM12-202ENST00000585388 942 ntTSL 3 BASIC30.45■■■□□ 2.47
CCDC88BA6NC98 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.47
CCDC88BA6NC98 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
CCDC88BA6NC98 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC30.45■■■□□ 2.47
CCDC88BA6NC98 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC30.45■■■□□ 2.47
CCDC88BA6NC98 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC30.45■■■□□ 2.47
CCDC88BA6NC98 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
CCDC88BA6NC98 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
CCDC88BA6NC98 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 AC005498.2-205ENST00000593218 784 ntBASIC30.44■■■□□ 2.46
CCDC88BA6NC98 AC099522.2-201ENST00000607001 744 ntBASIC30.44■■■□□ 2.46
CCDC88BA6NC98 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 AC093512.1-201ENST00000617969 520 ntBASIC30.44■■■□□ 2.46
CCDC88BA6NC98 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms