Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 IGHGP-201ENST00000390555 1178 ntBASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 AC005521.1-201ENST00000393351 872 ntBASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 AL137013.1-201ENST00000432946 1228 ntBASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 BX664615.1-201ENST00000443558 458 ntBASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 AC005363.2-201ENST00000618631 242 ntBASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 LYSMD4-203ENST00000378904 2122 ntBASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TCRBV7S3A2A0A539 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 MIR662-201ENST00000384847 95 ntBASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 KRT18P57-201ENST00000443599 1254 ntBASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TCRBV7S3A2A0A539 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.03■□□□□ 0.48
TCRBV7S3A2A0A539 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms