Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.94■□□□□ 0.94
LIMCH1Q9UPQ0 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 ZNF444P1-201ENST00000559497 298 ntBASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 AL353692.3-201ENST00000407031 1396 ntBASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 BX276092.7-203ENST00000637198 1536 ntBASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMCH1Q9UPQ0 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 HBZP1-201ENST00000354915 429 ntBASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 AC005521.1-201ENST00000393351 872 ntBASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 TSPY5P-201ENST00000426936 936 ntBASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 KRT18P38-201ENST00000449496 1282 ntBASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 AC068472.1-201ENST00000474589 881 ntBASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms