Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 MST1L-201ENST00000442552 2185 ntBASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 CYP51A1P1-201ENST00000492267 1507 ntBASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 AC009065.1-201ENST00000564055 1225 ntBASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 GRAP-204ENST00000573099 846 ntTSL 3 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 AC046158.3-201ENST00000624947 2558 ntBASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CHMP1AQ9HD42 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 NKILA-202ENST00000614771 2598 ntBASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CHMP1AQ9HD42 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC15.33■□□□□ 0.05
CHMP1AQ9HD42 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC15.33■□□□□ 0.05
CHMP1AQ9HD42 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
CHMP1AQ9HD42 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.33■□□□□ 0.05
CHMP1AQ9HD42 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CHMP1AQ9HD42 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CHMP1AQ9HD42 AC011676.5-201ENST00000624864 2660 ntBASIC15.33■□□□□ 0.05
CHMP1AQ9HD42 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CHMP1AQ9HD42 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CHMP1AQ9HD42 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms