Protein–RNA interactions for Protein: Q9H4D5

NXF3, Nuclear RNA export factor 3, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NXF3Q9H4D5 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 RPS2P28-201ENST00000314255 741 ntBASIC19.15■□□□□ 0.66
NXF3Q9H4D5 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 DDX43P3-201ENST00000441064 443 ntBASIC19.15■□□□□ 0.66
NXF3Q9H4D5 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 AC107918.4-202ENST00000641623 219 ntBASIC19.15■□□□□ 0.66
NXF3Q9H4D5 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.15■□□□□ 0.66
NXF3Q9H4D5 HLA-J-201ENST00000462773 1622 ntBASIC19.14■□□□□ 0.66
NXF3Q9H4D5 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
NXF3Q9H4D5 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.14■□□□□ 0.66
NXF3Q9H4D5 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
NXF3Q9H4D5 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NXF3Q9H4D5 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NXF3Q9H4D5 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 AC008735.5-201ENST00000623544 497 ntBASIC19.14■□□□□ 0.65
NXF3Q9H4D5 AL022326.1-202ENST00000641533 845 ntBASIC19.14■□□□□ 0.65
NXF3Q9H4D5 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 SIGLEC16-201ENST00000599858 1437 ntBASIC19.14■□□□□ 0.65
NXF3Q9H4D5 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 KRT18P55-202ENST00000578578 1546 ntBASIC19.14■□□□□ 0.65
NXF3Q9H4D5 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 AC148477.5-201ENST00000625164 1645 ntBASIC19.14■□□□□ 0.65
NXF3Q9H4D5 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 AC138028.4-201ENST00000564984 1845 ntBASIC19.14■□□□□ 0.65
NXF3Q9H4D5 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NXF3Q9H4D5 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 ABALON-201ENST00000629058 1903 ntBASIC19.13■□□□□ 0.65
NXF3Q9H4D5 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 RPL13AP23-201ENST00000480739 586 ntBASIC19.13■□□□□ 0.65
NXF3Q9H4D5 AC092910.1-201ENST00000482027 1129 ntBASIC19.13■□□□□ 0.65
NXF3Q9H4D5 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.13■□□□□ 0.65
NXF3Q9H4D5 AC109462.3-201ENST00000573934 613 ntBASIC19.13■□□□□ 0.65
NXF3Q9H4D5 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms