Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 AL590627.1-203ENST00000421194 1026 ntBASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 AC126763.1-201ENST00000552015 2118 ntBASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 AC148477.8-201ENST00000624298 468 ntBASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 ABALON-201ENST00000629058 1903 ntBASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAIPQ9BWF2 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 FAM220CP-201ENST00000395253 831 ntBASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 AC073648.2-201ENST00000510116 352 ntBASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 IL9RP2-201ENST00000423948 1312 ntBASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.45■□□□□ 0.7
TRAIPQ9BWF2 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms