Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 AC096633.1-201ENST00000422446 749 ntBASIC15.41■□□□□ 0.06
COL12A1Q99715 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.41■□□□□ 0.06
COL12A1Q99715 SLC25A39P2-201ENST00000537614 270 ntBASIC15.41■□□□□ 0.06
COL12A1Q99715 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.41■□□□□ 0.06
COL12A1Q99715 AD001527.2-201ENST00000622994 785 ntBASIC15.41■□□□□ 0.06
COL12A1Q99715 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
COL12A1Q99715 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.41■□□□□ 0.06
COL12A1Q99715 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
COL12A1Q99715 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL12A1Q99715 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.4■□□□□ 0.06
COL12A1Q99715 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC15.4■□□□□ 0.06
COL12A1Q99715 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.4■□□□□ 0.06
COL12A1Q99715 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.4■□□□□ 0.06
COL12A1Q99715 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL12A1Q99715 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC15.4■□□□□ 0.06
COL12A1Q99715 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
COL12A1Q99715 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.4■□□□□ 0.06
COL12A1Q99715 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC15.4■□□□□ 0.06
COL12A1Q99715 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL12A1Q99715 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.4■□□□□ 0.06
COL12A1Q99715 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.4■□□□□ 0.06
COL12A1Q99715 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.4■□□□□ 0.06
COL12A1Q99715 KRT8P48-201ENST00000515599 1220 ntBASIC15.4■□□□□ 0.06
COL12A1Q99715 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.4■□□□□ 0.06
COL12A1Q99715 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
COL12A1Q99715 AC092552.1-201ENST00000547243 906 ntBASIC15.4■□□□□ 0.06
COL12A1Q99715 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL12A1Q99715 AC008667.4-201ENST00000607370 168 ntBASIC15.4■□□□□ 0.06
COL12A1Q99715 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.4■□□□□ 0.06
COL12A1Q99715 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL12A1Q99715 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL12A1Q99715 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL12A1Q99715 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL12A1Q99715 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
COL12A1Q99715 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL12A1Q99715 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL12A1Q99715 GPS2P2-201ENST00000430745 888 ntBASIC15.4■□□□□ 0.06
COL12A1Q99715 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.4■□□□□ 0.06
COL12A1Q99715 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
COL12A1Q99715 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.4■□□□□ 0.06
COL12A1Q99715 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.4■□□□□ 0.06
COL12A1Q99715 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
COL12A1Q99715 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
COL12A1Q99715 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC15.39■□□□□ 0.05
COL12A1Q99715 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
COL12A1Q99715 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
COL12A1Q99715 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.39■□□□□ 0.05
COL12A1Q99715 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
COL12A1Q99715 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.39■□□□□ 0.05
COL12A1Q99715 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.39■□□□□ 0.05
COL12A1Q99715 AC140878.1-201ENST00000565277 250 ntBASIC15.39■□□□□ 0.05
COL12A1Q99715 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.39■□□□□ 0.05
COL12A1Q99715 SNAI3-AS1-205ENST00000568633 2096 ntBASIC15.39■□□□□ 0.05
COL12A1Q99715 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
COL12A1Q99715 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC15.39■□□□□ 0.05
COL12A1Q99715 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.39■□□□□ 0.05
COL12A1Q99715 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC15.39■□□□□ 0.05
COL12A1Q99715 AC019129.2-201ENST00000609837 1235 ntBASIC15.39■□□□□ 0.05
COL12A1Q99715 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC15.39■□□□□ 0.05
COL12A1Q99715 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC15.39■□□□□ 0.05
COL12A1Q99715 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL12A1Q99715 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC15.39■□□□□ 0.05
COL12A1Q99715 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 POLI-202ENST00000406285 2030 ntTSL 2 BASIC15.38■□□□□ 0.05
COL12A1Q99715 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC15.38■□□□□ 0.05
COL12A1Q99715 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC15.38■□□□□ 0.05
COL12A1Q99715 AC004890.2-204ENST00000481968 304 ntBASIC15.38■□□□□ 0.05
COL12A1Q99715 GIMAP3P-201ENST00000495150 836 ntBASIC15.38■□□□□ 0.05
COL12A1Q99715 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.38■□□□□ 0.05
COL12A1Q99715 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.38■□□□□ 0.05
COL12A1Q99715 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
COL12A1Q99715 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms