Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 REXO1L3P-201ENST00000622202 1288 ntBASIC17.31■□□□□ 0.36
CFAP54Q96N23 AC004790.2-201ENST00000623588 572 ntBASIC17.31■□□□□ 0.36
CFAP54Q96N23 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
CFAP54Q96N23 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CFAP54Q96N23 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CFAP54Q96N23 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CFAP54Q96N23 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CFAP54Q96N23 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CFAP54Q96N23 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CFAP54Q96N23 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CFAP54Q96N23 KRT8P32-201ENST00000512863 1461 ntBASIC17.3■□□□□ 0.36
CFAP54Q96N23 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CFAP54Q96N23 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CFAP54Q96N23 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CFAP54Q96N23 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CFAP54Q96N23 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CFAP54Q96N23 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CFAP54Q96N23 AC074386.1-202ENST00000463561 864 ntBASIC17.3■□□□□ 0.36
CFAP54Q96N23 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.3■□□□□ 0.36
CFAP54Q96N23 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.3■□□□□ 0.36
CFAP54Q96N23 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.3■□□□□ 0.36
CFAP54Q96N23 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CFAP54Q96N23 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CFAP54Q96N23 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CFAP54Q96N23 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CFAP54Q96N23 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CFAP54Q96N23 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.3■□□□□ 0.36
CFAP54Q96N23 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.3■□□□□ 0.36
CFAP54Q96N23 TIMM8BP1-201ENST00000452384 211 ntBASIC17.3■□□□□ 0.36
CFAP54Q96N23 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CFAP54Q96N23 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
CFAP54Q96N23 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CFAP54Q96N23 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CFAP54Q96N23 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 SLC25A39P2-201ENST00000537614 270 ntBASIC17.29■□□□□ 0.36
CFAP54Q96N23 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 Z98044.1-201ENST00000632503 1764 ntBASIC17.29■□□□□ 0.36
CFAP54Q96N23 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 AL162274.1-201ENST00000617191 1098 ntBASIC17.29■□□□□ 0.36
CFAP54Q96N23 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CFAP54Q96N23 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
CFAP54Q96N23 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CFAP54Q96N23 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CFAP54Q96N23 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CFAP54Q96N23 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CFAP54Q96N23 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CFAP54Q96N23 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CFAP54Q96N23 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CFAP54Q96N23 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CFAP54Q96N23 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CFAP54Q96N23 SPTLC1P1-201ENST00000447199 261 ntBASIC17.28■□□□□ 0.36
CFAP54Q96N23 AC069335.1-201ENST00000489972 472 ntBASIC17.28■□□□□ 0.36
CFAP54Q96N23 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 AC068137.2-201ENST00000605408 478 ntBASIC17.28■□□□□ 0.36
CFAP54Q96N23 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CFAP54Q96N23 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CFAP54Q96N23 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CFAP54Q96N23 HAUS4P1-201ENST00000406739 1145 ntBASIC17.27■□□□□ 0.36
CFAP54Q96N23 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
CFAP54Q96N23 SPDYE21P-201ENST00000413323 827 ntBASIC17.27■□□□□ 0.36
CFAP54Q96N23 AC007967.3-201ENST00000434308 558 ntBASIC17.27■□□□□ 0.36
CFAP54Q96N23 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.27■□□□□ 0.36
CFAP54Q96N23 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC17.27■□□□□ 0.36
CFAP54Q96N23 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms