Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC140Q96MF4 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 BX276092.7-203ENST00000637198 1536 ntBASIC13.76□□□□□ -0.21
CCDC140Q96MF4 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 AP002383.4-201ENST00000442518 975 ntBASIC13.76□□□□□ -0.21
CCDC140Q96MF4 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 AC011840.4-201ENST00000578471 627 ntBASIC13.76□□□□□ -0.21
CCDC140Q96MF4 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 AC091076.1-201ENST00000610741 619 ntBASIC13.76□□□□□ -0.21
CCDC140Q96MF4 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC140Q96MF4 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 KRT18P1-202ENST00000452408 1331 ntBASIC13.75□□□□□ -0.21
CCDC140Q96MF4 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 AC246785.2-201ENST00000432512 513 ntBASIC13.75□□□□□ -0.21
CCDC140Q96MF4 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 AC091607.1-201ENST00000490318 1060 ntBASIC13.75□□□□□ -0.21
CCDC140Q96MF4 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 NT5C-211ENST00000582170 653 ntTSL 3 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 AC069148.1-201ENST00000608741 768 ntBASIC13.75□□□□□ -0.21
CCDC140Q96MF4 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 HLA-J-201ENST00000462773 1622 ntBASIC13.75□□□□□ -0.21
CCDC140Q96MF4 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 AC010460.3-201ENST00000511359 1579 ntBASIC13.75□□□□□ -0.21
CCDC140Q96MF4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC140Q96MF4 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 TBC1D3P5-201ENST00000579401 1545 ntBASIC13.74□□□□□ -0.21
CCDC140Q96MF4 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 AC097374.2-201ENST00000618617 1306 ntBASIC13.74□□□□□ -0.21
CCDC140Q96MF4 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms