Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC19.17■□□□□ 0.66
LRCH3Q96II8 AL596325.1-201ENST00000563991 1082 ntBASIC19.17■□□□□ 0.66
LRCH3Q96II8 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.17■□□□□ 0.66
LRCH3Q96II8 AL589182.2-201ENST00000619332 1049 ntBASIC19.17■□□□□ 0.66
LRCH3Q96II8 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
LRCH3Q96II8 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LRCH3Q96II8 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.17■□□□□ 0.66
LRCH3Q96II8 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.17■□□□□ 0.66
LRCH3Q96II8 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.17■□□□□ 0.66
LRCH3Q96II8 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
LRCH3Q96II8 TNXA-203ENST00000507684 2038 ntBASIC19.17■□□□□ 0.66
LRCH3Q96II8 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LRCH3Q96II8 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRCH3Q96II8 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LRCH3Q96II8 AL121761.2-201ENST00000598007 1648 ntBASIC19.16■□□□□ 0.66
LRCH3Q96II8 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRCH3Q96II8 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRCH3Q96II8 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LRCH3Q96II8 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
LRCH3Q96II8 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
LRCH3Q96II8 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.16■□□□□ 0.66
LRCH3Q96II8 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LRCH3Q96II8 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRCH3Q96II8 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LRCH3Q96II8 AC051619.7-201ENST00000568314 623 ntBASIC19.16■□□□□ 0.66
LRCH3Q96II8 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.16■□□□□ 0.66
LRCH3Q96II8 AC008687.5-201ENST00000593746 558 ntBASIC19.16■□□□□ 0.66
LRCH3Q96II8 AC025048.6-201ENST00000634326 1161 ntBASIC19.16■□□□□ 0.66
LRCH3Q96II8 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.16■□□□□ 0.66
LRCH3Q96II8 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRCH3Q96II8 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRCH3Q96II8 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRCH3Q96II8 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 LINC01126-201ENST00000623515 1646 ntBASIC19.15■□□□□ 0.66
LRCH3Q96II8 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 COX5BP8-201ENST00000416911 349 ntBASIC19.15■□□□□ 0.66
LRCH3Q96II8 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
LRCH3Q96II8 REXO1L3P-201ENST00000622202 1288 ntBASIC19.15■□□□□ 0.66
LRCH3Q96II8 AC009093.7-201ENST00000623853 1223 ntBASIC19.15■□□□□ 0.66
LRCH3Q96II8 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRCH3Q96II8 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.14■□□□□ 0.66
LRCH3Q96II8 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.14■□□□□ 0.66
LRCH3Q96II8 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
LRCH3Q96II8 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
LRCH3Q96II8 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LRCH3Q96II8 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.14■□□□□ 0.65
LRCH3Q96II8 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.14■□□□□ 0.65
LRCH3Q96II8 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC19.14■□□□□ 0.65
LRCH3Q96II8 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC19.14■□□□□ 0.65
LRCH3Q96II8 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC19.14■□□□□ 0.65
LRCH3Q96II8 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.14■□□□□ 0.65
LRCH3Q96II8 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.14■□□□□ 0.65
LRCH3Q96II8 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC19.14■□□□□ 0.65
LRCH3Q96II8 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.14■□□□□ 0.65
LRCH3Q96II8 AC027307.3-201ENST00000594262 1100 ntBASIC19.14■□□□□ 0.65
LRCH3Q96II8 AC010654.1-201ENST00000615722 808 ntBASIC19.14■□□□□ 0.65
LRCH3Q96II8 SNX12-206ENST00000622259 661 ntTSL 5 BASIC19.14■□□□□ 0.65
LRCH3Q96II8 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
LRCH3Q96II8 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 TEX21P-204ENST00000641479 1693 ntBASIC19.14■□□□□ 0.65
LRCH3Q96II8 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRCH3Q96II8 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
LRCH3Q96II8 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRCH3Q96II8 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
LRCH3Q96II8 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRCH3Q96II8 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC19.13■□□□□ 0.65
LRCH3Q96II8 RHOQP3-201ENST00000437982 621 ntBASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms