Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 POLD2P1-201ENST00000511220 997 ntBASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ABR-204ENST00000543210 1049 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AL353692.3-201ENST00000407031 1396 ntBASIC5.51□□□□□ -1.53
SYNE1Q8NF91 FEM1AP3-201ENST00000403722 1741 ntBASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AC211486.1-202ENST00000416371 468 ntBASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AC211476.1-201ENST00000503899 468 ntBASIC5.51□□□□□ -1.53
SYNE1Q8NF91 NMU-202ENST00000505262 693 ntTSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 REEP1-209ENST00000541910 969 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 HR-201ENST00000312841 5351 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 KRT8P32-201ENST00000512863 1461 ntBASIC5.5□□□□□ -1.53
SYNE1Q8NF91 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AC096582.2-201ENST00000510860 516 ntBASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 TLE1-202ENST00000376484 666 ntTSL 3 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 KATNBL1P6-202ENST00000562413 1466 ntBASIC5.5□□□□□ -1.53
SYNE1Q8NF91 HMGN1P19-201ENST00000436976 333 ntBASIC5.5□□□□□ -1.53
SYNE1Q8NF91 SART3-203ENST00000546611 1184 ntBASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 Z98044.1-201ENST00000632503 1764 ntBASIC5.5□□□□□ -1.53
SYNE1Q8NF91 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 TP73-AS1-210ENST00000637775 1455 ntBASIC5.5□□□□□ -1.53
SYNE1Q8NF91 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 CD276-203ENST00000537340 2439 ntTSL 2 BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms