Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 AC096734.2-201ENST00000562054 433 ntBASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 AC010654.1-201ENST00000615722 808 ntBASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 AC093028.1-201ENST00000622998 982 ntBASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC44A3Q8N4M1 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 MRPL20P1-201ENST00000400819 433 ntBASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 AL035633.1-201ENST00000406139 838 ntBASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 TSEN15P1-201ENST00000423257 515 ntBASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 SPCS2P1-201ENST00000561636 679 ntBASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 BCAR1-209ENST00000546196 1340 ntBASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SLC44A3Q8N4M1 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 ANO7L1-203ENST00000602586 1720 ntBASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 AL139400.1-201ENST00000366220 510 ntBASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 KRT19P2-202ENST00000557173 1012 ntBASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.1■□□□□ 0.49
SLC44A3Q8N4M1 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
SLC44A3Q8N4M1 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms