Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 FER1L4-210ENST00000615531 5998 ntBASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 AC034236.2-201ENST00000606662 1610 ntBASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 CICP6-201ENST00000457191 2729 ntBASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 AC005521.1-201ENST00000393351 872 ntBASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 RCN1P1-201ENST00000400413 996 ntBASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 TSPY17P-201ENST00000450329 467 ntBASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 AL512604.3-201ENST00000569583 964 ntBASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 AC093010.1-201ENST00000473625 1624 ntBASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
DEPDC4Q8N2C3 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
DEPDC4Q8N2C3 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
DEPDC4Q8N2C3 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.58■□□□□ 0.25
DEPDC4Q8N2C3 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.58■□□□□ 0.25
DEPDC4Q8N2C3 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.25
DEPDC4Q8N2C3 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
DEPDC4Q8N2C3 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
DEPDC4Q8N2C3 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
DEPDC4Q8N2C3 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
DEPDC4Q8N2C3 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 AC008040.2-201ENST00000461049 708 ntBASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 KRT8P50-201ENST00000562022 1438 ntBASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 AL138688.1-201ENST00000624851 1594 ntBASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 NKILA-202ENST00000614771 2598 ntBASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
DEPDC4Q8N2C3 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 AC018695.7-201ENST00000624587 2492 ntBASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms