Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 AC106795.1-205ENST00000512851 1056 ntBASIC16.51■□□□□ 0.23
BEST3Q8N1M1 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 AL662844.1-201ENST00000546340 181 ntBASIC16.51■□□□□ 0.23
BEST3Q8N1M1 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 TP73-AS1-207ENST00000624167 988 ntBASIC16.51■□□□□ 0.23
BEST3Q8N1M1 AC009113.1-201ENST00000570267 2443 ntBASIC16.51■□□□□ 0.23
BEST3Q8N1M1 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 AC079776.4-201ENST00000511039 504 ntBASIC16.5■□□□□ 0.23
BEST3Q8N1M1 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 AC008608.2-201ENST00000606089 416 ntBASIC16.5■□□□□ 0.23
BEST3Q8N1M1 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 PHGDH-209ENST00000641074 1780 ntBASIC16.5■□□□□ 0.23
BEST3Q8N1M1 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 AC135050.7-201ENST00000624508 2218 ntBASIC16.5■□□□□ 0.23
BEST3Q8N1M1 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BEST3Q8N1M1 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 WIZP1-201ENST00000531444 2299 ntBASIC16.49■□□□□ 0.23
BEST3Q8N1M1 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 AL133373.2-201ENST00000623187 2828 ntBASIC16.49■□□□□ 0.23
BEST3Q8N1M1 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 AC011467.2-201ENST00000598425 242 ntBASIC16.49■□□□□ 0.23
BEST3Q8N1M1 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 INTS4P1-201ENST00000438455 1935 ntBASIC16.49■□□□□ 0.23
BEST3Q8N1M1 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BEST3Q8N1M1 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms