Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AC016734.2-201ENST00000624325 1377 ntBASIC20.97■□□□□ 0.95
SYNE3Q6ZMZ3 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 AC100803.2-201ENST00000562459 1963 ntBASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 TSSC2-201ENST00000450217 709 ntBASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 AL592071.1-201ENST00000611956 408 ntBASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 AC134043.2-201ENST00000624206 2238 ntBASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
SYNE3Q6ZMZ3 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
SYNE3Q6ZMZ3 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 RN7SL606P-201ENST00000472779 293 ntBASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 AC011840.4-201ENST00000578471 627 ntBASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE3Q6ZMZ3 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE3Q6ZMZ3 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SYNE3Q6ZMZ3 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SYNE3Q6ZMZ3 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SYNE3Q6ZMZ3 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SYNE3Q6ZMZ3 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SYNE3Q6ZMZ3 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SYNE3Q6ZMZ3 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms