Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.1■□□□□ 0.97
CTR9Q6PD62 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.1■□□□□ 0.97
CTR9Q6PD62 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CTR9Q6PD62 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC21.1■□□□□ 0.97
CTR9Q6PD62 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTR9Q6PD62 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.1■□□□□ 0.97
CTR9Q6PD62 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTR9Q6PD62 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CTR9Q6PD62 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC21.1■□□□□ 0.97
CTR9Q6PD62 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTR9Q6PD62 CD9-202ENST00000382515 1229 ntTSL 5 BASIC21.1■□□□□ 0.97
CTR9Q6PD62 MRPL3P1-201ENST00000400109 1033 ntBASIC21.1■□□□□ 0.97
CTR9Q6PD62 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.1■□□□□ 0.97
CTR9Q6PD62 FGFR3P6-201ENST00000457012 610 ntBASIC21.1■□□□□ 0.97
CTR9Q6PD62 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC21.1■□□□□ 0.97
CTR9Q6PD62 AC122714.2-201ENST00000502787 707 ntBASIC21.1■□□□□ 0.97
CTR9Q6PD62 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.1■□□□□ 0.97
CTR9Q6PD62 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
CTR9Q6PD62 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTR9Q6PD62 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTR9Q6PD62 LTB4R2-202ENST00000528054 3092 ntBASIC21.1■□□□□ 0.97
CTR9Q6PD62 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTR9Q6PD62 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.1■□□□□ 0.97
CTR9Q6PD62 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTR9Q6PD62 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC21.09■□□□□ 0.97
CTR9Q6PD62 KRT18P55-202ENST00000578578 1546 ntBASIC21.09■□□□□ 0.97
CTR9Q6PD62 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTR9Q6PD62 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CTR9Q6PD62 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CTR9Q6PD62 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTR9Q6PD62 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTR9Q6PD62 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTR9Q6PD62 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTR9Q6PD62 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTR9Q6PD62 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTR9Q6PD62 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC21.09■□□□□ 0.97
CTR9Q6PD62 RBM17P3-201ENST00000417687 1192 ntBASIC21.09■□□□□ 0.97
CTR9Q6PD62 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.09■□□□□ 0.97
CTR9Q6PD62 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CTR9Q6PD62 MTDHP3-201ENST00000594186 672 ntBASIC21.09■□□□□ 0.97
CTR9Q6PD62 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
CTR9Q6PD62 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTR9Q6PD62 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTR9Q6PD62 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.09■□□□□ 0.97
CTR9Q6PD62 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC21.09■□□□□ 0.97
CTR9Q6PD62 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.09■□□□□ 0.97
CTR9Q6PD62 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTR9Q6PD62 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTR9Q6PD62 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTR9Q6PD62 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTR9Q6PD62 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTR9Q6PD62 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTR9Q6PD62 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTR9Q6PD62 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTR9Q6PD62 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 SLC25A6P4-201ENST00000586535 553 ntBASIC21.08■□□□□ 0.97
CTR9Q6PD62 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC21.08■□□□□ 0.97
CTR9Q6PD62 AP000867.4-201ENST00000641616 219 ntBASIC21.08■□□□□ 0.97
CTR9Q6PD62 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
CTR9Q6PD62 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.08■□□□□ 0.96
CTR9Q6PD62 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTR9Q6PD62 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC21.08■□□□□ 0.96
CTR9Q6PD62 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTR9Q6PD62 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTR9Q6PD62 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CTR9Q6PD62 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CTR9Q6PD62 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC21.07■□□□□ 0.96
CTR9Q6PD62 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CTR9Q6PD62 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CTR9Q6PD62 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC21.07■□□□□ 0.96
CTR9Q6PD62 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC21.07■□□□□ 0.96
CTR9Q6PD62 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC21.07■□□□□ 0.96
CTR9Q6PD62 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.07■□□□□ 0.96
CTR9Q6PD62 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.07■□□□□ 0.96
CTR9Q6PD62 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTR9Q6PD62 AC020763.4-201ENST00000623414 4170 ntBASIC21.07■□□□□ 0.96
CTR9Q6PD62 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms