Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 KRT18P41-201ENST00000518924 1277 ntBASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 AC046158.3-201ENST00000624947 2558 ntBASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PPP4R4Q6NUP7 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PPP4R4Q6NUP7 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PPP4R4Q6NUP7 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PPP4R4Q6NUP7 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.08■□□□□ 0.33
PPP4R4Q6NUP7 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.08■□□□□ 0.33
PPP4R4Q6NUP7 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PPP4R4Q6NUP7 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
PPP4R4Q6NUP7 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
PPP4R4Q6NUP7 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PPP4R4Q6NUP7 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 GMCL1P1-201ENST00000463439 1581 ntBASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 KRT18P55-202ENST00000578578 1546 ntBASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 KRT18P22-201ENST00000402024 1347 ntBASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 AC128688.1-201ENST00000487626 519 ntBASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 AC010947.1-201ENST00000623454 693 ntBASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PPP4R4Q6NUP7 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 AC096733.2-201ENST00000609937 1394 ntBASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 LIN28AP1-201ENST00000429574 405 ntBASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 CCR12P-201ENST00000446203 998 ntBASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 ATP5G1P1-201ENST00000448724 379 ntBASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 ECEL1P2-202ENST00000465689 757 ntBASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 PRSS44-201ENST00000515154 1146 ntBASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 CKBP1-201ENST00000565489 1086 ntBASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PPP4R4Q6NUP7 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms