Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT40Q6A162 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT40Q6A162 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.61■□□□□ 0.89
KRT40Q6A162 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT40Q6A162 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT40Q6A162 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT40Q6A162 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT40Q6A162 MTCL1P1-201ENST00000446207 792 ntBASIC20.61■□□□□ 0.89
KRT40Q6A162 AC111152.3-201ENST00000569699 673 ntBASIC20.61■□□□□ 0.89
KRT40Q6A162 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
KRT40Q6A162 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
KRT40Q6A162 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.61■□□□□ 0.89
KRT40Q6A162 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.61■□□□□ 0.89
KRT40Q6A162 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.61■□□□□ 0.89
KRT40Q6A162 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT40Q6A162 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.61■□□□□ 0.89
KRT40Q6A162 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.61■□□□□ 0.89
KRT40Q6A162 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT40Q6A162 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
KRT40Q6A162 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT40Q6A162 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT40Q6A162 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT40Q6A162 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT40Q6A162 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
KRT40Q6A162 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
KRT40Q6A162 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
KRT40Q6A162 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
KRT40Q6A162 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.6■□□□□ 0.89
KRT40Q6A162 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT40Q6A162 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT40Q6A162 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT40Q6A162 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
KRT40Q6A162 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.6■□□□□ 0.89
KRT40Q6A162 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
KRT40Q6A162 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.6■□□□□ 0.89
KRT40Q6A162 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.6■□□□□ 0.89
KRT40Q6A162 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
KRT40Q6A162 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.6■□□□□ 0.89
KRT40Q6A162 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.6■□□□□ 0.89
KRT40Q6A162 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
KRT40Q6A162 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT40Q6A162 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT40Q6A162 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT40Q6A162 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
KRT40Q6A162 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT40Q6A162 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.59■□□□□ 0.89
KRT40Q6A162 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.59■□□□□ 0.89
KRT40Q6A162 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
KRT40Q6A162 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT40Q6A162 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
KRT40Q6A162 FZD10-202ENST00000539839 3282 ntBASIC20.59■□□□□ 0.89
KRT40Q6A162 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT40Q6A162 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.59■□□□□ 0.89
KRT40Q6A162 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT40Q6A162 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.59■□□□□ 0.89
KRT40Q6A162 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
KRT40Q6A162 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.59■□□□□ 0.89
KRT40Q6A162 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT40Q6A162 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.59■□□□□ 0.89
KRT40Q6A162 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.59■□□□□ 0.89
KRT40Q6A162 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.59■□□□□ 0.89
KRT40Q6A162 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT40Q6A162 AC116407.2-201ENST00000613639 860 ntBASIC20.59■□□□□ 0.89
KRT40Q6A162 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.59■□□□□ 0.89
KRT40Q6A162 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT40Q6A162 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT40Q6A162 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT40Q6A162 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
KRT40Q6A162 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT40Q6A162 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT40Q6A162 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
KRT40Q6A162 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT40Q6A162 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT40Q6A162 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
KRT40Q6A162 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
KRT40Q6A162 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT40Q6A162 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.58■□□□□ 0.89
KRT40Q6A162 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
KRT40Q6A162 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT40Q6A162 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT40Q6A162 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
KRT40Q6A162 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT40Q6A162 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.58■□□□□ 0.89
KRT40Q6A162 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.58■□□□□ 0.89
KRT40Q6A162 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.58■□□□□ 0.89
KRT40Q6A162 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.58■□□□□ 0.89
KRT40Q6A162 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT40Q6A162 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT40Q6A162 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT40Q6A162 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT40Q6A162 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT40Q6A162 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT40Q6A162 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.57■□□□□ 0.88
KRT40Q6A162 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
KRT40Q6A162 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
KRT40Q6A162 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms