Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LONRF3Q496Y0 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LONRF3Q496Y0 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
LONRF3Q496Y0 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LONRF3Q496Y0 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.24■□□□□ 0.83
LONRF3Q496Y0 AC012313.1-201ENST00000593393 3059 ntBASIC20.24■□□□□ 0.83
LONRF3Q496Y0 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.24■□□□□ 0.83
LONRF3Q496Y0 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LONRF3Q496Y0 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LONRF3Q496Y0 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
LONRF3Q496Y0 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LONRF3Q496Y0 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 AC080080.1-201ENST00000625121 2420 ntBASIC20.22■□□□□ 0.83
LONRF3Q496Y0 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 AC106820.2-201ENST00000563775 3264 ntBASIC20.22■□□□□ 0.83
LONRF3Q496Y0 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
LONRF3Q496Y0 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 AC016734.2-201ENST00000624325 1377 ntBASIC20.21■□□□□ 0.83
LONRF3Q496Y0 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 AC008687.5-201ENST00000593746 558 ntBASIC20.21■□□□□ 0.83
LONRF3Q496Y0 NPAP1P7-201ENST00000613027 823 ntBASIC20.21■□□□□ 0.83
LONRF3Q496Y0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 AC022898.2-201ENST00000616822 1312 ntBASIC20.21■□□□□ 0.83
LONRF3Q496Y0 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.21■□□□□ 0.83
LONRF3Q496Y0 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms