Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 MIR3652-201ENST00000579335 131 ntBASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 LINC00896-202ENST00000609602 2128 ntBASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD3Q3KNS1 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 PRELID1P1-202ENST00000567272 903 ntBASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 AL390719.2-201ENST00000606993 987 ntBASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD3Q3KNS1 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.38
PTCHD3Q3KNS1 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PTCHD3Q3KNS1 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD3Q3KNS1 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms