Protein–RNA interactions for Protein: P83916

CBX1, Chromobox protein homolog 1, humanhuman

Predictions only

Length 185 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1P83916 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 AC135279.3-201ENST00000610945 1311 ntBASIC18.62■□□□□ 0.57
CBX1P83916 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CBX1P83916 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.62■□□□□ 0.57
CBX1P83916 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.62■□□□□ 0.57
CBX1P83916 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CBX1P83916 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.62■□□□□ 0.57
CBX1P83916 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CBX1P83916 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC18.62■□□□□ 0.57
CBX1P83916 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.61■□□□□ 0.57
CBX1P83916 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC18.61■□□□□ 0.57
CBX1P83916 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 GMCL1P1-201ENST00000463439 1581 ntBASIC18.61■□□□□ 0.57
CBX1P83916 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 KRT8P8-201ENST00000434750 1448 ntBASIC18.61■□□□□ 0.57
CBX1P83916 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CBX1P83916 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.61■□□□□ 0.57
CBX1P83916 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 AC012414.1-201ENST00000556676 535 ntBASIC18.61■□□□□ 0.57
CBX1P83916 AC027682.1-201ENST00000562846 899 ntBASIC18.61■□□□□ 0.57
CBX1P83916 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CBX1P83916 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC18.61■□□□□ 0.57
CBX1P83916 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CBX1P83916 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
CBX1P83916 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX1P83916 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CBX1P83916 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.6■□□□□ 0.57
CBX1P83916 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
CBX1P83916 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC18.6■□□□□ 0.57
CBX1P83916 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.6■□□□□ 0.57
CBX1P83916 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CBX1P83916 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.6■□□□□ 0.57
CBX1P83916 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC18.6■□□□□ 0.57
CBX1P83916 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.6■□□□□ 0.57
CBX1P83916 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CBX1P83916 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CBX1P83916 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CBX1P83916 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.6■□□□□ 0.57
CBX1P83916 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC18.6■□□□□ 0.57
CBX1P83916 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.6■□□□□ 0.57
CBX1P83916 DUX4L2-201ENST00000561772 1275 ntBASIC18.6■□□□□ 0.57
CBX1P83916 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.6■□□□□ 0.57
CBX1P83916 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
CBX1P83916 DUX4L6-201ENST00000626483 1275 ntBASIC18.6■□□□□ 0.57
CBX1P83916 DUX4L1-201ENST00000627662 1275 ntBASIC18.6■□□□□ 0.57
CBX1P83916 DUX4L8-201ENST00000629013 1275 ntBASIC18.6■□□□□ 0.57
CBX1P83916 DUX4L3-201ENST00000630187 1275 ntBASIC18.6■□□□□ 0.57
CBX1P83916 DUX4L7-201ENST00000630678 1275 ntBASIC18.6■□□□□ 0.57
CBX1P83916 DUX4L5-201ENST00000630834 1275 ntBASIC18.6■□□□□ 0.57
CBX1P83916 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.6■□□□□ 0.57
CBX1P83916 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CBX1P83916 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC18.6■□□□□ 0.57
CBX1P83916 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.6■□□□□ 0.57
CBX1P83916 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX1P83916 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
CBX1P83916 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX1P83916 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX1P83916 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CBX1P83916 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.59■□□□□ 0.57
CBX1P83916 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.59■□□□□ 0.57
CBX1P83916 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.59■□□□□ 0.57
CBX1P83916 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX1P83916 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX1P83916 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX1P83916 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX1P83916 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX1P83916 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX1P83916 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CBX1P83916 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX1P83916 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms